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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco019563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24552.2 Da PI: 6.1142 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.2 | 9.5e-32 | 25 | 124 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++r++Ca+dC+la+yfpae++ +f++v+k+FG sn++k+l+a +e r++a+++l++eAe+r rdP G+++ + +l+ + + l+ +a+l Aco019563.1 25 ACASCKHQRKRCAEDCFLAKYFPAEKQGEFRAVQKVFGLSNLTKMLRANATEAaRQRAARTLTWEAEWRDRDPADGCFREVAELRCENRLLRDRIAAL 122 7**********************************************9977766********************************999999988877 PP DUF260 98 ke 99 + Aco019563.1 123 TQ 124 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.988 | 24 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-29 | 25 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MQTNGGGGGG GRSCSDGESA GLRQACASCK HQRKRCAEDC FLAKYFPAEK QGEFRAVQKV 60 FGLSNLTKML RANATEAARQ RAARTLTWEA EWRDRDPADG CFREVAELRC ENRLLRDRIA 120 ALTQALTCQY PTLPPLPQFL HHDALQNDTV SIILNNNGNS NSNGNNNLVR ENLSYYNFCN 180 GPVGPVLGAT SISSPPSFVD QGNFSPFNDD DEESNVLLHP DAVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-16 | 19 | 126 | 5 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-16 | 19 | 126 | 5 | 112 | LOB family transfactor Ramosa2.1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098050.1 | 1e-167 | LOB domain-containing protein 12-like | ||||
TrEMBL | A0A199UW00 | 1e-104 | A0A199UW00_ANACO; LOB domain-containing protein 2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-23 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Aco019563.1 |