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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco019552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 27245.9 Da PI: 9.6462 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3.1e-18 | 6 | 85 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ +++pkkf+++++g+ s + l++++g+ W++ + +k+++ ++l++GW eF a++++e+D + F+ +++s+f v +++ Aco019552.1 6 TKC-MSIPKKFVDNFNGQ--ISNVVDLKTPRGNIWTIGV--TKSQDNIFLQSGWTEFIAAHRIEENDLLFFTCKRNSSF--EVAIYD 85 455.********998888..7889***************..*******************************9998999..666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.874 | 1 | 87 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.94E-17 | 5 | 85 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-19 | 5 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.6E-8 | 5 | 87 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-15 | 7 | 84 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-19 | 8 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVEDFTKCMS IPKKFVDNFN GQISNVVDLK TPRGNIWTIG VTKSQDNIFL QSGWTEFIAA 60 HRIEENDLLF FTCKRNSSFE VAIYDESGCE KASPFFVKKN ARKTREGDGA IPAETRNEGN 120 RRRKVINLCS SGSSSENDVE QKISRKSLHA NNKTGGAIPR TNEKHKALPE EPVGTGYGIF 180 DNDLTYYVRS NLKPRRRAAL ALALAVNVSY AKGVYPSPLM ALEDEKYRLR YGLAEKGLRH 240 CGT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092052.1 | 2e-91 | B3 domain-containing protein Os03g0620400 | ||||
TrEMBL | A0A199VWZ9 | 8e-83 | A0A199VWZ9_ANACO; B3 domain-containing protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco019552.1 |