PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019352.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 491aa    MW: 54274.1 Da    PI: 4.4128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019352.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.7e-511062331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtd el+++yLk+k+ gk++++ e+i+e+++yk+ PwdLp k  + ++++ewyfF+ rdkkya+g+r+nrat++g+Wk+tgkd+++++ +
  Aco019352.1 106 LPPGFRFHPTDVELISYYLKRKIMGKPFRV-EAISEIELYKFPPWDLPdKsLLLSNDREWYFFCARDKKYANGSRTNRATENGFWKTTGKDRSIVH-N 201
                  79****************************.89**************96444556899**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg kktL+f++g+ap+g +t+Wvm eyr+
  Aco019352.1 202 SRTVGKKKTLIFHTGKAPRGDRTNWVMYEYRM 233
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-59100261IPR003441NAC domain
PROSITE profilePS5100556.866106261IPR003441NAC domain
PfamPF023654.7E-26107233IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVSSLHSHYI NPSTNPLGLL LPFPIFFCKD RTTVAASSSP SPSPPPRLCL HLKCLLSSER  60
IIVGFFGVTF GSYAVVGCGV IIVSYFGTGL DRYQRIALSI MAKTSLPPGF RFHPTDVELI  120
SYYLKRKIMG KPFRVEAISE IELYKFPPWD LPDKSLLLSN DREWYFFCAR DKKYANGSRT  180
NRATENGFWK TTGKDRSIVH NSRTVGKKKT LIFHTGKAPR GDRTNWVMYE YRMEDEEVAA  240
AVYPVKCIDN SSYVLCKIFE KSGMGPKIGE QYGALFREED WDNDEDTIDP AFTLPIIPSN  300
APESLNNTTA VPVGQQSVVS AGGEASSAAN IPGDDDLLYD DGISLEDLLA NCLDDPPPDE  360
GNELPDSTTL NNNNEAVGAD AEGIYDELED LLVWMEEREM GSLYNPGNVA NCGYGMQPML  420
SDFGSEHYVE LNDLCFLEQN DLPNDLLATH PLQSRMYYPV PDAGAVFPTA SIANTSSPLR  480
PTLPGDEPDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5010226211169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088503.10.0NAC domain-containing protein 78-like
RefseqXP_020088504.10.0NAC domain-containing protein 78-like
RefseqXP_020088505.10.0NAC domain-containing protein 78-like
TrEMBLA0A199VRM40.0A0A199VRM4_ANACO; NAC domain-containing protein 78
STRINGXP_008813044.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-79NAC domain containing protein 2