PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018944.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 414aa    MW: 45502.4 Da    PI: 7.2666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018944.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-125176126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 +++++C f++rtGtC yG++C+++H+
  Aco018944.1 51 PGEPNCIFYMRTGTCGYGSKCRYNHP 76
                 5789*********************8 PP
2zf-CCCH34.63.1e-1195120227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C+ff++tGtC++G++Ck++H++
  Aco018944.1  95 GQPDCQFFLKTGTCRFGGTCKYHHPR 120
                  6799********************96 PP
3zf-CCCH391.3e-12140165227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C +++rtG Ck+G  CkF+H++
  Aco018944.1 140 GEKPCAYYMRTGSCKFGVACKFNHPQ 165
                  6789********************97 PP
4zf-CCCH39.87.4e-13263289127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++f++tGtCkyG +Ck++H++
  Aco018944.1 263 PGQPDCQYFMKTGTCKYGTSCKYHHPK 289
                  5789*********************96 PP
5zf-CCCH32.71.3e-10309335127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f+  +G CkyG+ Ck+ H++
  Aco018944.1 309 PGEPVCNFYTMYGSCKYGSACKYDHPQ 335
                  5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2165078IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-55077IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-105276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-55477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-45675IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.51693121IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-995120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-698124IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746138166IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5142164IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.267262290IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10264289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6267292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5268292IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371308336IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-8310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5312335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4313333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MPENGELNRP VSNPANASPD DELEERMWGL KVDDGPPDWA DGHGSPYPYR PGEPNCIFYM  60
RTGTCGYGSK CRYNHPAYYF GQVIQYGGEL PQREGQPDCQ FFLKTGTCRF GGTCKYHHPR  120
DKVNAQPIQL NYLGLPIREG EKPCAYYMRT GSCKFGVACK FNHPQPSTSG YMFPVTSGSS  180
AYGSTASSMV SPSGLPLMGG LSTWPFSRTP YAPHSHLLLP PNQSTMPMQH GWSAYTDGVN  240
QISSAKNHTE SGSSTPSNLP DRPGQPDCQY FMKTGTCKYG TSCKYHHPKE RRNQVAVSTV  300
GPLGLPLRPG EPVCNFYTMY GSCKYGSACK YDHPQMVGYY NYNYNYAMPA LSIQDPSVMF  360
PNQRSSQVTV TAPQRSPPKA EASDDDPADP SSQSSPSNNE PHSQSTQDQS DQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6617183e-59KM661718.1 Ananas bracteatus clone 44506b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100030.10.0zinc finger CCCH domain-containing protein 63-like isoform X1
TrEMBLA0A199VBB10.0A0A199VBB1_ANACO; Zinc finger CCCH domain-containing protein 3
STRINGXP_008803512.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-84C3H family protein