PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco018680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 20949.9 Da PI: 8.708 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.4 | 2.8e-39 | 23 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rr+C+++C++ pyf ++p+kfa vhk+FGasn +k+l+ +pe++r da+++lvyeA++r++dPvyG++gvil+lqqq++ l+ael ++k Aco018680.1 23 PCAACKFMRRRCTQQCPFFPYFSPHEPQKFASVHKVFGASNASKILSVVPESQRADAANTLVYEANMRLQDPVYGCTGVILALQQQVQALEAELGAVK 120 7*********************************************************************************************9988 PP DUF260 99 ee 100 +e Aco018680.1 121 AE 122 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.434 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-39 | 23 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAQRPPLGPA GGMLSTALNT VTPCAACKFM RRRCTQQCPF FPYFSPHEPQ KFASVHKVFG 60 ASNASKILSV VPESQRADAA NTLVYEANMR LQDPVYGCTG VILALQQQVQ ALEAELGAVK 120 AEVLKYKYRP TAVATATILP PSTSHAAAFL ATAAGLSVTA PPPLATATPA PASSSSSMYT 180 AASSSTDYSS VTNENAPYFG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-41 | 23 | 126 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-41 | 23 | 126 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020103786.1 | 1e-144 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 1e-59 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A199UPS9 | 1e-113 | A0A199UPS9_ANACO; LOB domain-containing protein 15 (Fragment) | ||||
STRING | GSMUA_Achr5P07460_001 | 2e-91 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-54 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Aco018680.1 |
Publications ? help Back to Top | |||
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