PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco018342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 22926 Da PI: 10.1046 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56 | 7.2e-18 | 14 | 90 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l++pkkf+++++g+ s + l++++g+ W++ + +k+++ ++l++GW eF a++++e+D + F+ +g+s+f v +++ Aco018342.1 14 LSIPKKFVDNFNGQ--ISNVVDLKTPRGNIWTIGV--TKSQDNIFLQSGWTEFIAAHRIEENDLLFFTCKGNSSF--EVAIYD 90 89******998888..7889***************..*******************************9999999..666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.4E-6 | 6 | 92 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-19 | 13 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 13 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.1E-15 | 14 | 89 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 14 | 92 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.71E-16 | 14 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MWRKRYVRQW ELLLSIPKKF VDNFNGQISN VVDLKTPRGN IWTIGVTKSQ DNIFLQSGWT 60 EFIAAHRIEE NDLLFFTCKG NSSFEVAIYD ESGCEKASPF FVKKNARKTR EGDGAIPAET 120 RNEGNRRRKV INLCSSGSFS ENDVEQKISR KSLRANNKTE ALPEEPVGTG YGIFDNDLAY 180 YVRSNLKPRR RAALALAVNV R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092052.1 | 4e-79 | B3 domain-containing protein Os03g0620400 | ||||
TrEMBL | A0A199VWZ9 | 9e-78 | A0A199VWZ9_ANACO; B3 domain-containing protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 9e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco018342.1 |