PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018224.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 449aa    MW: 47088.9 Da    PI: 9.5802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018224.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-2082131255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++aa+++++g
  Aco018224.1  82 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDAAALRFRG 131
                  7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003089.8E-113448IPR000104Antifreeze protein, type I
PRINTSPR003089.8E-114859IPR000104Antifreeze protein, type I
PRINTSPR003089.8E-115968IPR000104Antifreeze protein, type I
SuperFamilySSF541711.5E-2282140IPR016177DNA-binding domain
PROSITE profilePS5103225.98982139IPR001471AP2/ERF domain
CDDcd000181.29E-2082141No hitNo description
SMARTSM003801.2E-3682145IPR001471AP2/ERF domain
PfamPF008476.3E-1482131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3282140IPR001471AP2/ERF domain
PRINTSPR003671.3E-118394IPR001471AP2/ERF domain
PRINTSPR003671.3E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042309Biological Processhomoiothermy
GO:0050826Biological Processresponse to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0050825Molecular Functionice binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MFVFENQSRD SSSPVSKQSN GRGFPSHLLL LLRLAAAAAA AAAAAAAAAA AAAAAAAAAA  60
AAAAAAAASS SSASPPPPPM RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR  120
AYDAAALRFR GSRAKLNFPE DARILPPTPP PPPPPHETTA TTQTAAAEYA DYARILQLEQ  180
MMSSNYETTM AGLSNPDPAP FSASASSVSA SSVSASHSYY PQFYNQDAGD PQQANFAGSG  240
EGGWSWDSEQ WKRLPLPPPP PPPRRRRRRL RCGATVACGS GRGGSGRRRS ATRTRRPACG  300
SDAAALRFRG SRAKLNFPED ARILPPTPPP PPPPHETTAA TQTAAAGYAD YARILQLEQM  360
MSSNYETTLA GLSNPDPAPS SASASSVSAS HSYYPQFYNQ DAGDPQQANF AGSGEGGWSW  420
DSGGSANYDY TMPPWSDSTQ YPPSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2281139463ATERF1
3gcc_A3e-2281139463ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269PRRRRRRL
2263270RRRRRRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393902e-72BT039390.1 Zea mays full-length cDNA clone ZM_BFc0010H11 mRNA, complete cds.
GenBankJX4699492e-72JX469949.1 Zea mays subsp. mays clone UT3210 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101711.12e-74ethylene-responsive transcription factor ERF110-like isoform X1
RefseqXP_020101719.12e-74ethylene-responsive transcription factor ERF110-like isoform X2
TrEMBLA0A199W7311e-73A0A199W731_ANACO; Ethylene-responsive transcription factor ERF112
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-28ethylene response factor 110