PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017789.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 453aa    MW: 50635.3 Da    PI: 7.9428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017789.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-055779123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C+k F r  nL+ H r H
  Aco017789.1 57 YICEVCHKGFQRDQNLQLHRRGH 79
                 89*******************88 PP
2zf-C2H2120.00063133155123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H + +
  Aco017789.1 133 WKCDKCSKRYAVQSDWKAHSKIC 155
                  58*****************9876 PP
3zf-C2H2110.0014163181523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg+ Fsrk+++++H   +
  Aco017789.1 163 DCGTIFSRKDSFVTHRAFC 181
                  9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-65679No hitNo description
Gene3DG3DSA:3.30.160.602.2E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0385779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7415779IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM003555498128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-5121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-6128153No hitNo description
SMARTSM00355140133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSNSSEEESH NNLQQKPIVP SSSKVLKKNN CTYLRYVDPD AEVIALSPHT LLATNRYICE  60
VCHKGFQRDQ NLQLHRRGHN LPWKLKQRSG TESKKRVYVC PEVSCTHHDP SRALGDLTGI  120
KKHYSRKHGE KKWKCDKCSK RYAVQSDWKA HSKICGTKEY RCDCGTIFSR KDSFVTHRAF  180
CDALAEENAR VNHSLTTMVG NLQSQPQDML SHSMPSLSSS TADTLMNSST SDQNPNNPLR  240
SLSLNPLIER SSEMLSSQIA SKDSWFQLSG GGSSSHYMPM GSASAYMSAT ALLQKAAELG  300
AKASDDSLSP ILLRGFTGYS TTTTRFPRSV QEPVNDHFET SGLMWNVPNL GNQSTFQTNS  360
KGNRNDNNTH EGEMQQGNNF HQEISRERDV RMTQDFLGLG PVGTIGISGH SYDNDPVVLN  420
YSDGQQENQQ DIYSYHQMPH GSTALEKPMW DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34129192366Zinc finger protein JACKDAW
5b3h_F5e-34129192366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111288.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-106IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A199UDX60.0A0A199UDX6_ANACO; Protein indeterminate-domain 2
STRINGXP_008797147.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]