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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Aco017586.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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| Family |
SRS |
| Protein Properties |
Length: 322aa MW: 33776.6 Da PI: 7.8522 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco017586.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 173.5 | 1e-53 | 124 | 264 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
g++sC+dCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaa+rrerq++++++++++ a + + + ++ + + +
Aco017586.1 124 GGGMSCRDCGNQAKKDCVHLRCRTCCKSRGFHCPTHVKSTWVPAARRRERQHNQQQQQQQQFAGGGSGRGEPSK----------RARE--VGG--PRE 207
5789**********************************************888777655554332222211111..........1111..122..234 PP
DUF702 101 etsslPeevsseavfrcvrvssvddg....eeelaYqtavsigGhvfkGiLydqGle 153
e++++P+evsseavfrcvrv+ v+d+ +ee+aY tavsigGhvfkGiL+++G++
Aco017586.1 208 EVARFPAEVSSEAVFRCVRVGPVEDEgravDEEYAYSTAVSIGGHVFKGILHHYGPD 264
6788********************954455789**********************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MAGFSLGGGR TGHNQNRDHN QQQQQQQQQQ QHQQQHPINI NPTADSLFLY GYSSSSVGGG 60
GGGGSGFQLW HQEGDFYSSR GGTGTGSGSG GGGGGAARII SFSDDHAAEG VGIMRGGSGG 120
SSGGGGMSCR DCGNQAKKDC VHLRCRTCCK SRGFHCPTHV KSTWVPAARR RERQHNQQQQ 180
QQQQFAGGGS GRGEPSKRAR EVGGPREEVA RFPAEVSSEA VFRCVRVGPV EDEGRAVDEE 240
YAYSTAVSIG GHVFKGILHH YGPDPNSSTS SDYHLLREGS PPTSAVGGDA SGAAVMIDPY 300
PTPLSGFLSG AQYYPHHTTS Q*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G66350.1 | 4e-43 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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