PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 558aa    MW: 59587.3 Da    PI: 8.482
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.32.7e-30419503186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev aLi++r+ +e ++++  lk+plWee s +m++ gf+rs+k+Ckekwen+nk+++k ke+ + r +++ +tcpyf++l+
  Aco017510.1 419 RWPRAEVEALIAVRSGLEAKFQEPGLKGPLWEEASGRMAALGFRRSAKRCKEKWENINKYFRKAKESGRAR-PQHAKTCPYFHHLD 503
                  8********************************************************************97.9999********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.539412476IPR017877Myb-like domain
CDDcd122031.49E-27418483No hitNo description
PfamPF138373.4E-20418504No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEEEAAEEEC PTCSSSWCRT GVQSSPSPPI QLLLLPLPHP SLPILSSTTT TTTTILSSTI  60
STTNLAIAAA AAAASPDPFG MPFLPIPVPL PAAAARACCR RHPTAISRSS TPLPVAAAAA  120
AAAGESLWRQ RRTPEPSLLS AAVNFKLAVD SGGGGGGGPE EESTIKELSW RPLDIDFLHN  180
SNSSNNKRHK MALATATTSL IPSRSSKYGE RGAATPTTTR SSASSRRSTS RQQQCCYNPH  240
RARCRRANQT GSGSAYRRMT TQYIAAAAEN EAPDDVGGTS ETSAGEEAAA AARKLSENRR  300
NCRCSELRRA AAAAAEAEAA AAAGDGELHA SFLEAAERRT RRTRSDESLA EQAAARVEPG  360
GGRPRPRPRL PPPPADARDS ALISFLENVS GDRIHLSEES YNKIAATSTE GAAEYSTSRW  420
PRAEVEALIA VRSGLEAKFQ EPGLKGPLWE EASGRMAALG FRRSAKRCKE KWENINKYFR  480
KAKESGRARP QHAKTCPYFH HLDVLYSSRS AVLDAVVVSK DHVGFKFGGG DRNQEGEDEE  540
GDDQNQEGDP NCNKKKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200631e-59AK120063.1 Oryza sativa Japonica Group cDNA clone:J013001K22, full insert sequence.
GenBankAP0040491e-59AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067201e-59AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149581e-59AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-59CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-38Trihelix family protein