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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 694aa MW: 76693.8 Da PI: 7.0636 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.9e-21 | 48 | 103 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Aco017307.1 48 KKRYHRHTAHQIQEMETLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 103 688999***********************************************998 PP | |||||||
2 | START | 153.7 | 1.6e-48 | 248 | 473 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 a +aa++l ++ + p+Wv+ +g+evl e ++ +++ea r+s++v+m++ +lv +ld + +W e ++ ka t++ Aco017307.1 248 AMTAADQLTRMCHTSGPLWVRNT--GDGTEVLDLDEHGRMfpwpidskeqhmeFRTEATRDSALVIMNSITLVDAFLDAN-KWMELFPsivlKARTVQ 342 678899999999999*****999..88888888888877788888889999999**************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 i +g g l+lm aelq lsplvp R+ f Ry++q +g+g+w+ivd vd q+ + s++R++++pSg++i++++ng+s+v+wveh++++ Aco017307.1 343 IIAPGisghcnGSLHLMHAELQYLSPLVPvREIQFFRYCQQnSGEGTWTIVDFPVDGFQDAGLQVSLARCRRRPSGCIIQDMPNGYSRVIWVEHIEVE 440 ************************************************************999*********************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqcek 206 +r +h+++ ++v+sg+a+ga +wv+ lqrqce+ Aco017307.1 441 DRPVHQVFSQFVNSGMAFGATRWVSILQRQCER 473 *******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.96E-19 | 42 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 42 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 45 | 105 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-19 | 46 | 109 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-18 | 48 | 103 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-18 | 48 | 106 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 80 | 103 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.544 | 237 | 476 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.27E-28 | 240 | 475 | No hit | No description |
CDD | cd08875 | 9.38E-113 | 241 | 472 | No hit | No description |
SMART | SM00234 | 9.3E-31 | 246 | 473 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-40 | 248 | 473 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-9 | 491 | 589 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MYKFSVSSXG SGHVDGLSCG EEHDNEHQKL QQQHQQQQQQ TPSGSAKKKR YHRHTAHQIQ 60 EMETLFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD NVVLRAENDS 120 LKNENFRLQA AIRNVVCPNC GGPAVLGEMS FDEQHLRIEN ARLKDELERL TCIASRYSGS 180 GSGGRPMQPL GAAAPMMMPS LDLDMGIYSR HFSEPALANC TDMIPDGHQP FAGMPIMDQD 240 KPLVLDLAMT AADQLTRMCH TSGPLWVRNT GDGTEVLDLD EHGRMFPWPI DSKEQHMEFR 300 TEATRDSALV IMNSITLVDA FLDANKWMEL FPSIVLKART VQIIAPGISG HCNGSLHLMH 360 AELQYLSPLV PVREIQFFRY CQQNSGEGTW TIVDFPVDGF QDAGLQVSLA RCRRRPSGCI 420 IQDMPNGYSR VIWVEHIEVE DRPVHQVFSQ FVNSGMAFGA TRWVSILQRQ CERLASLMAR 480 NISDLGVIPS PEARKNMMKL SQRMIRTFCA NVSASGMQSW TALSDSSEDT IRVTTRKNTE 540 PGQPNGVILT AASTTWLPFS HQQVFDLLTD EQRRSQLDVL SSGNSLHEVA HIANGSHPRN 600 CVSLLRINVS IHSSPYRCDG SGASAATAAA VAPGCLLTIS MQVLASAVPS AKLNLSSVTA 660 VNHHLCNAVR QISAALGGPP QPEPAGTAAP PDP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020084988.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q336P2 | 0.0 | ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A1U7YXD9 | 0.0 | A0A1U7YXD9_NELNU; homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
STRING | XP_010245210.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Aco017307.1 |
Publications ? help Back to Top | |||
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