PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017264.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 503aa    MW: 55770.8 Da    PI: 5.1404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017264.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-13301345554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  + ++E++RR+++N++++ L++l+P++     +K + a+i+  A+eYI++L
  Aco017264.1 301 NFAAEKQRREQLNEKYAALKSLVPNP-----TKSDRASIVGDAIEYINEL 345
                  6899**********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.526296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10301345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-13302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.18E-14302365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-11303350No hitNo description
Gene3DG3DSA:4.10.280.104.2E-12303358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MARCVKNLDS DLALHDKHGG WNSIKTAKMF DENGYTDPSH DPNLVPNSSF HSSSQEPLPD  60
NGLGGVKECT KVPFFPIEEF SSQNHYPSLE GTSIAAGLDH LENQLGFDIE QELHSHIIHG  120
TPSMESATWE PAMQDIQDPA IYLQQNYENQ LPIPVEQNIQ SSDGLLYPNS YAVTTDLLSF  180
MKLPRCTTNP DYPPMSGFPF EAYNELSGAT IQDGGASMLY DPALHSVVCP TTRSHLLKDL  240
LHSLPQNYGM LYGDEGDAVI GVGEGIGGNI FQPIDGRKIS SAILDCRREI GGLAKVDGKQ  300
NFAAEKQRRE QLNEKYAALK SLVPNPTKSD RASIVGDAIE YINELNRTIK ELKILVEQKR  360
HGNERRKMLK MVNDVNSGDM ESSSMSPFRG DQDNPLNGAL RSSWIQRRSK DCFVDVRIID  420
DEVNIKITRK NKANCLLYVA KVLDELQLEL IHSTGATIGD HNIFMFNTKI FEGSSVYAGA  480
VAKKIIEAME KQYPTITFPT SF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085229.10.0transcription factor EAT1-like
SwissprotQ7X8R01e-136EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A199V7T90.0A0A199V7T9_ANACO; Transcription factor bHLH10 (Fragment)
STRINGXP_008800057.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-57bHLH family protein