PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017242.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 1180aa    MW: 129663 Da    PI: 6.9294
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017242.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix842e-269231004186
     trihelix    1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86  
                   +W  qe+++Li +r e+e++++++k++k+lWe+v+++mr+rg++r+p qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  Aco017242.1  923 QWGPQETRELIGIRGELERHFSASKRNKTLWEAVASRMRDRGYRRTPDQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 1004
                   7**************************************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF506301.3E-84572906IPR021109Aspartic peptidase domain
Gene3DG3DSA:2.40.70.107.7E-36572749IPR021109Aspartic peptidase domain
CDDcd054762.58E-78576907No hitNo description
PfamPF145431.8E-51577749IPR032861Xylanase inhibitor, N-terminal
PROSITE profilePS5176742.078577914IPR033121Peptidase family A1 domain
Gene3DG3DSA:2.40.70.104.0E-31750906IPR021109Aspartic peptidase domain
PfamPF145419.1E-22772906IPR032799Xylanase inhibitor, C-terminal
PROSITE patternPS001410794805IPR001969Aspartic peptidase, active site
CDDcd122037.37E-29922987No hitNo description
PfamPF138373.4E-239231005No hitNo description
PROSITE profilePS500907.596924980IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000023Biological Processmaltose metabolic process
GO:0005983Biological Processstarch catabolic process
GO:0006508Biological Processproteolysis
GO:0007154Biological Processcell communication
GO:0007275Biological Processmulticellular organism development
GO:0009624Biological Processresponse to nematode
GO:0009629Biological Processresponse to gravity
GO:0009706Cellular Componentchloroplast inner membrane
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0005363Molecular Functionmaltose transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 1180 aa     Download sequence    Send to blast
MALTAVAPPL SLCLRQPPPF LRPAPLSSSA PHPPPRLPLL KPLASLPKAL KPINSSSPFL  60
GLRLRLRRRR SLLSYAAASD SDSIPSPTAK DDGKFHEWDS MTAKFAGAAN VPFLLLQLPQ  120
IVLNARNLLS GNKTALFAVP WLGMLTGLLG NLSLLSYFAK KRETEAVLIQ TLGVISTYVV  180
IAQLWMAGAM PSPQFVATSA VVATGLVLNF LNYFAWLNDR VWLLWEDFIT VGGLSVLPQV  240
MWSTFVPFIP NSILPGIISS AVAVVAVVMA RMGKLSDEGT RFVRSLSGWT ATLLFMWMPV  300
AQMWTNYLNP NNIKGLSAFT MLLAMIGNGL MIPRALFIRD LMWFTGSAWA SFLHGWGNLA  360
CMYCFNSISR EFFLATTVGL LLWLGTILWR DTFSDRDGVC CLTASCIAVG IIPVVPSIRR  420
YFHLNRPRFL SNFFSTCSPS PPTLSSPIDF GDSREDIKMG VDGEVGRDNE GKGEVAEEDE  480
RDVGEGEAVE DAASRRERSI REEAEGAAGA SSKGFTVELI HRDSPKSPLY NHSQTHSNRL  540
RAAARRSRAR AELLHRTLAR SEGRSLESEL KRSTAEYLMA INVGTPPKRI LTIADTGSDL  600
IWSNCEPCTS CFPSDAPHFD PSASSTFRSL SCDSDPCAAL PGTACGDNDS CTYVASYGDG  660
SQTSGTLATE TFTFRAAADG GSSVRVPSIS FGCSDDSEGL FDGHSGGIVG LGGGPLSLVS  720
QLGSSIDGRF SYCLVSAGAN HSSSQLRFGA DAVVSGKNAV STPLVPALSG TFYVVTLDGI  780
SVDGVDLPIE QGNIIVDSGT TLTLLAPAAL KSLSRQLESS ISLPRVDDPQ GTFTLCFDVH  840
KAPRHFEFPD VTFHFGTAPV KLPAGNAFLQ LDEGTVCLAM IPVTGSITFA IFGNIAQQNF  900
HIGYDLMMLG GGGGRGREER VPQWGPQETR ELIGIRGELE RHFSASKRNK TLWEAVASRM  960
RDRGYRRTPD QCKCKWKNLV NRYKGKETSD PENGRQCPFF EELHAVFTER ARNMQRQLLE  1020
SEHPGGPSST LKKKPKRSGG DRSSDELSDE DNDEEEEEEG DSGDERPATS RKRKAERDKP  1080
KGATSSTSNS IHDLLQGFLQ QQQRMDVQWR EMMERRAHER LLFEQEWRQS MEKLERERLM  1140
MEQAWREREE QRRIREEMRA EKRDALLTTL LNKLLQDNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A6e-15918994177DNA binding protein GT-1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP720622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-34Trihelix family protein