PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017123.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 305aa    MW: 31071.4 Da    PI: 10.0711
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017123.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-0999124227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ f     Ck+Gd+C+FaHg+
  Aco017123.1  99 KTRLCNKFNTAEGCKFGDKCHFAHGE 124
                  8***********************96 PP
2zf-CCCH37.44.3e-12271295126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC  fa+ GtC +GdrC+FaHg
  Aco017123.1 271 YKTKLCEKFAK-GTCTFGDRCHFAHG 295
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0753159IPR000571Zinc finger, CCCH-type
SMARTSM00356133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-53257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-53356IPR000571Zinc finger, CCCH-type
PfamPF146080.883956No hitNo description
SuperFamilySSF902292.09E-896128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1496129IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-497124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.98697125IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-699124IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.35E-16164242IPR004088K Homology domain, type 1
SMARTSM003222.4E-11171241IPR004087K Homology domain
PROSITE profilePS5008414.361172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-16172240IPR004088K Homology domain, type 1
PfamPF000131.7E-11174238IPR004088K Homology domain, type 1
CDDcd001057.05E-15174236No hitNo description
Gene3DG3DSA:4.10.1000.104.1E-16268301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9270301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.671270297IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-8270296IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDGGRKRGRP GAANGGGVGA KRSREMDSGL GSKLKPCTKF FSTAGCQFGE GCHFLHYVPG  60
GYQAVAQMTN LGNLAHAPPA RAPVAAPPAS NSSSAPAVKT RLCNKFNTAE GCKFGDKCHF  120
AHGERELGKP ISQDGGPTMA PPPIAGGRPV PGRYEPPMPL AGSGAPGSFG ASATAKISVD  180
ASLAGAIIGK GGVNTKQICR VTGAKLAIRD HESDPNLRNI ELEGTFDQIK HASAMVRELI  240
VSVSASTPMP TKPLAAAAAA AGGHGGPGNN YKTKLCEKFA KGTCTFGDRC HFAHGSGELR  300
KTAV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103049.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R01e-124C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A199UV850.0A0A199UV85_ANACO; Zinc finger CCCH domain-containing protein 14
STRINGXP_008805470.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-52C3H family protein