PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016842.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 278aa    MW: 31289.2 Da    PI: 8.713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016842.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-055072123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ Cg+ F++   L  H+++H
  Aco016842.1 50 YTCSFCGREFRSAQALGGHMNVH 72
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.64E-74776No hitNo description
Gene3DG3DSA:3.30.160.601.7E-44874IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.2175077IPR007087Zinc finger, C2H2
SMARTSM003550.00135072IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-65073IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDHTNYWFLT RRKLSKRPLL GPYNESWEEQ AFAEDSAGLL GGCIWPPRSY TCSFCGREFR  60
SAQALGGHMN VHRRDRARLK QSSSPTHENQ YESLHNHQIS PFAPYAPQVG SLVYNSSPNP  120
NPNPNSACGM VASPLSPTEA SAVFAKRIWR EHMILMSPSD SPSVIQDKQK GSVYSTIQSN  180
ENPRARQLLN VTELSAGKEN SKLRVRGSWM QRDLGEEEDD EFIPSKRRRT DPVPPLFARS  240
SSGERRKIFQ PEVLKLCPSP VEELDLELRL GDPPKVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124572229superman protein
2l1o_A1e-124572229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087488.10.0uncharacterized protein LOC109709599
TrEMBLA0A199W8520.0A0A199W852_ANACO; Putative transcriptional regulator RABBIT EARS (Fragment)
STRINGXP_008801652.15e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-26zinc-finger protein 10