PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco016786.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 441aa MW: 48608 Da PI: 5.5326

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco016786.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	261.9	2.3e-80	75	437	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lLl++A+av+s d +a+++L rl l +s + ++ Rla+yf+++L++r a++++ + s+ +++s+++++a+++ +e+sP++kf+h++ Aco016786.1 75 DLLLAAADAVESADSDRARSVLDRLDRLllaQSGSTGSFDRLAHYFARGLRSRTAHHGP-----RNESKLGRSDSVHNMSAHQMVQELSPYVKFAHFA 167 79*********************9998544445589*************9444.....455666667789999*************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 aNqaIlea++g++ vH+iDfd+++G+QWp+L+ L R +++ slRiT+v++ + + +++++tg+rL++fAe++g+ ++f+ + +++ d+ e+++ Aco016786.1 168 ANQAILEATDGDDDVHVIDFDVMEGIQWPPLMADLVGR-GPASSLRITAVVK-DGDAVDSVHRTGRRLSEFAESIGLMLHFDWISMNDGGDI--ERIE 261 *********************************9.8999*****.55699*********************977766666..8999 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsleaklpres.eerikvEre 288 ++++ +l+V+++++ + +++s +s +++L vk+lsP++vv+ve e+ + +++ sF f+eal+++s+ dsl +++ + vEr Aco016786.1 262 LNSKRTLIVSCMMHQVQCPSRSY--RS-LKSFLLGVKKLSPRLVVLVEDELFRcSKSafdSFSGFFCEALHHFSTTADSLGSSFCGGYkMGLRIVERD 356 99999****8888885544..44.559***************5553443455999*************66665555267789 PP GRAS 289 llgreivnvvacegaerrerhetlekWr...erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +lg++i+++v + ekW + GF+p+p+s +++qak l+ ++ +gy v++e g l l+Wk+rpL++vS+W Aco016786.1 357 MLGPKIEDCVGRVEYG------PGEKWAlgeGLHGFEGFRPIPVSGCNVSQAKFLVGLFN-RGYGVKHEMGRLALCWKSRPLTTVSVW 437 ******988776......67788622134445799*****************.************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.818	47	419	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.7E-78	75	437	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEAIAYPQTP LFSFSTEHDE SISDDPVGCT DPTVHTYLGE EHPHANWLFQ GPVLSLEENL 60 VAIQEELMEE NSSSDLLLAA ADAVESADSD RARSVLDRLD RLLLAQSGST GSFDRLAHYF 120 ARGLRSRTAH HGPRNESKLG RSDSVHNMSA HQMVQELSPY VKFAHFAANQ AILEATDGDD 180 DVHVIDFDVM EGIQWPPLMA DLVGRGPASS LRITAVVKDG DAVDSVHRTG RRLSEFAESI 240 GLMLHFDWIS MNDGGDIERI ELNSKRTLIV SCMMHQVQCP SRSYRSLKSF LLGVKKLSPR 300 LVVLVEDELF RCSKSAFDSF SGFFCEALHH FSTTADSLGS SFCGGYKMGL RIVERDMLGP 360 KIEDCVGRVE YGPGEKWALG EGLHGFEGFR PIPVSGCNVS QAKFLVGLFN RGYGVKHEMG 420 RLALCWKSRP LTTVSVWVPA *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEAIAYPQTP LFSFSTEHDE SISDDPVGCT DPTVHTYLGE EHPHANWLFQ GPVLSLEENL  60
VAIQEELMEE NSSSDLLLAA ADAVESADSD RARSVLDRLD RLLLAQSGST GSFDRLAHYF  120
ARGLRSRTAH HGPRNESKLG RSDSVHNMSA HQMVQELSPY VKFAHFAANQ AILEATDGDD  180
DVHVIDFDVM EGIQWPPLMA DLVGRGPASS LRITAVVKDG DAVDSVHRTG RRLSEFAESI  240
GLMLHFDWIS MNDGGDIERI ELNSKRTLIV SCMMHQVQCP SRSYRSLKSF LLGVKKLSPR  300
LVVLVEDELF RCSKSAFDSF SGFFCEALHH FSTTADSLGS SFCGGYKMGL RIVERDMLGP  360
KIEDCVGRVE YGPGEKWALG EGLHGFEGFR PIPVSGCNVS QAKFLVGLFN RGYGVKHEMG  420
RLALCWKSRP LTTVSVWVPA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-43	81	439	26	379	Protein SCARECROW
5b3h_D	2e-43	81	439	26	379	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107062.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A199VB57	0.0	A0A199VB57_ANACO; Nodulation-signaling pathway 2 protein
STRING	XP_008781634.1	1e-147	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7684	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	3e-41	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aco016786.1