PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015871.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HB-other
Protein Properties Length: 306aa    MW: 34475.2 Da    PI: 5.1171
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015871.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.5e-072372632955
                  HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  29 ereeLAkklgLterqVkvWFqNrRake 55 
                  e++ LA+++gL+++q+ +WF N+R ++
  Aco015871.1 237 EKAALAQSTGLDQKQINNWFINQRKRH 263
                  6789********************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012550.003466101IPR005540KNOX1
SMARTSM012563.1E-23115166IPR005541KNOX2
PfamPF037913.8E-22121165IPR005541KNOX2
PROSITE profilePS512138.678199219IPR005539ELK domain
Gene3DG3DSA:1.10.10.607.0E-15235268IPR009057Homeodomain-like
PfamPF059201.1E-9236262IPR008422Homeobox KN domain
SuperFamilySSF466892.05E-9236275IPR009057Homeodomain-like
PROSITE profilePS500719.782237266IPR001356Homeobox domain
CDDcd000861.18E-7237266No hitNo description
PROSITE patternPS000270241264IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDEQLYQVRG EGLHPRSSNT CITSSLVLVA PPSPTITTSH SSSLYAHPFL NHQSTKHLSQ  60
SSINGDSLKA RIISHPQYTN LVGCPPEAVE QLTAAAGDVA ARHWAMLSHP DAPPPSPPPP  120
VDPELDQFME AYYQLLVNYK EEFTRPLNEA TEFLRRAESQ LNSLTDEPVR SFSADDGEER  180
SNSIDTGAPE IDPRAEDREL RSHLLKKYGG YLRAVEEEEE REASERSSPE APNLEMEKAA  240
LAQSTGLDQK QINNWFINQR KRHWKPLEEM QFIAWDGNNY HLQAEFYMHG HFMSNAQAID  300
VTKKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6647700.0KM664770.1 Ananas bracteatus clone 49772b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083146.10.0homeotic protein knotted-1-like
TrEMBLA0A1U7ZE001e-75A0A1U7ZE00_NELNU; homeobox protein knotted-1-like 2
STRINGXP_010245637.12e-76(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.16e-64KNOTTED-like from Arabidopsis thaliana