PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco015722.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SRS

Protein Properties

Length: 373aa MW: 38166.1 Da PI: 9.6521

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015722.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	209.6	7.7e-65	118	305	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstklss 93 g++sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpa+krrerqq+laaa++ + + a ++skr+re + +++ + ++ + Aco015722.1 118 GGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFQCPTHVKSTWVPASKRRERQQHLAAAAAALHNPRrlaaaaaAPDTSKRPREICPRPAATPAVASAGT 215 5789***********************************************998766544433567776677889999998665555554444333 PP DUF702 94 aeskkeletss..........................lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGle 153 +s ++ + + +P+evss+avfrcvrvs++d+ +e+elaYqtav igGhvf+GiLydqG+e Aco015722.1 216 RSSATQKLFLNhflldrrflknlklilsvllgmegvsFPAEVSSPAVFRCVRVSTMDEaaaaAEDELAYQTAVRIGGHVFRGILYDQGPE 305 33322222222468999************************************965555899********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-63	120	305	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-27	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.4E-23	253	304	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAGFSLGGGR RGSEGGENEQ QHQHAAAAAA AAVIPPDSLF LFGGGTNQQP DISYPRGFEL 60 WQHHHHPQLP SSAAAAAALI GFSSDHQLPA GRIVMRGGGG GGRSGGAAAA GSSGGGGGGG 120 VSCQDCGNQA KKDCAHMRCR TCCKSRGFQC PTHVKSTWVP ASKRRERQQH LAAAAAALHN 180 PRRLAAAAAA PDTSKRPREI CPRPAATPAV ASAGTRSSAT QKLFLNHFLL DRRFLKNLKL 240 ILSVLLGMEG VSFPAEVSSP AVFRCVRVST MDEAAAAAED ELAYQTAVRI GGHVFRGILY 300 DQGPEPSSST PPAAALAAAA AAVSGSMAAG PSAVVSAGML DAPNLSSSSL QYPTPLSAFM 360 AGTQFFPHHP RP*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAGFSLGGGR RGSEGGENEQ QHQHAAAAAA AAVIPPDSLF LFGGGTNQQP DISYPRGFEL  60
WQHHHHPQLP SSAAAAAALI GFSSDHQLPA GRIVMRGGGG GGRSGGAAAA GSSGGGGGGG  120
VSCQDCGNQA KKDCAHMRCR TCCKSRGFQC PTHVKSTWVP ASKRRERQQH LAAAAAALHN  180
PRRLAAAAAA PDTSKRPREI CPRPAATPAV ASAGTRSSAT QKLFLNHFLL DRRFLKNLKL  240
ILSVLLGMEG VSFPAEVSSP AVFRCVRVST MDEAAAAAED ELAYQTAVRI GGHVFRGILY  300
DQGPEPSSST PPAAALAAAA AAVSGSMAAG PSAVVSAGML DAPNLSSSSL QYPTPLSAFM  360
AGTQFFPHHP RP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020096500.1	1e-177	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A199VIU6	1e-171	A0A199VIU6_ANACO; Protein SHORT INTERNODES
STRING	GSMUA_Achr5P14410_001	2e-84	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	4e-45	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Aco015722.1