PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 362aa MW: 39779.2 Da PI: 7.8568

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015637.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.9e-06	193	212	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ Aco015637.1 193 FSCPVCSKTFNRYNNMQMHM 212 89*****************9 PP
2	zf-C2H2	14.5	0.0001	277	299	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Aco015637.1 277 FMCRKCGKAFAVRGDWRTHEKNC 299 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.39E-5	189	215	No hit	No description
PROSITE profile	PS50157	10.242	193	220	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.054	193	215	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.5E-6	193	212	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	195	215	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50868	8.004	235	251	IPR003616	Post-SET domain
SuperFamily	SSF57667	1.7E-6	258	297	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-5	273	297	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	277	297	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	277	297	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	160	303	326	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MADPYTNFFK GYFHPKNPFS SSSSTTSPSP LPLPQSPPPS PPLREALPLL TLSPTNHHHH 60 HHHQEEEDNT SCSAFEGGGD HHNTEKEKGG GGGGGGGGGL GCSNSSNNNN GGNNYEEGVT 120 VALHIGLPTP GAADLISRVS SSTSVDDDSS KMEGEEDAMD GTIPLGYPTI GRLTKGQYWI 180 PTPSQILIGP TQFSCPVCSK TFNRYNNMQM HMWGHGSQYR RGPESLRGTQ PTAMLRLPCY 240 CCAPGCRNHI DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG 300 KLWYCVCGSD FKHKRSLKDH VRAFGHGHAA YGIDCFAAED DDDEPSSEIE QDCNHRRHRS 360 R*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MADPYTNFFK GYFHPKNPFS SSSSTTSPSP LPLPQSPPPS PPLREALPLL TLSPTNHHHH  60
HHHQEEEDNT SCSAFEGGGD HHNTEKEKGG GGGGGGGGGL GCSNSSNNNN GGNNYEEGVT  120
VALHIGLPTP GAADLISRVS SSTSVDDDSS KMEGEEDAMD GTIPLGYPTI GRLTKGQYWI  180
PTPSQILIGP TQFSCPVCSK TFNRYNNMQM HMWGHGSQYR RGPESLRGTQ PTAMLRLPCY  240
CCAPGCRNHI DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG  300
KLWYCVCGSD FKHKRSLKDH VRAFGHGHAA YGIDCFAAED DDDEPSSEIE QDCNHRRHRS  360
R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020109079.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-127	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A199VH58	0.0	A0A199VH58_ANACO; Zinc finger protein WIP2
STRING	XP_008798774.1	1e-167	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aco015637.1

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]