PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco015633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Trihelix | ||||||||
Protein Properties | Length: 404aa MW: 44504.1 Da PI: 5.7147 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.7 | 4.2e-20 | 89 | 206 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..............................lkkplWeevskkm.rergferspkqCkekwenlnkrykkikeg 67 +Wt++ v++Li+++ ++++ ++ +kk++W+ +s+ m +++g+++sp+qC++k+++lnkryk+++++ Aco015633.1 89 KWTDDIVRLLIRLVALVGDDPAAATesdggggapcsrrrphggaaasssssssalQKKGKWKTISRLMlERGGCRVSPQQCEDKFNDLNKRYKRLNDI 186 7999999999999995555555433344455555566666666666666777777*************778899************************ PP trihelix 68 ekkr.tsessstcpyfdqle 86 +++ +++++++ +++d+l+ Aco015633.1 187 LGRGtSCRVVENPSLLDSLT 206 ****66999***99999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0019 | 86 | 179 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.5E-15 | 87 | 232 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MENPMMGGGG GGGGGGILDF DPHHHHHHHL RHLVSHLPPT AASPSDDDDP TASAAADDDG 60 HGYGGGADAA RGGAKKGGSS SSAPWQRMKW TDDIVRLLIR LVALVGDDPA AATESDGGGG 120 APCSRRRPHG GAAASSSSSS SALQKKGKWK TISRLMLERG GCRVSPQQCE DKFNDLNKRY 180 KRLNDILGRG TSCRVVENPS LLDSLTHVTA KGKDDVRKIL SSKHLFYREM CAYHNGQRIP 240 SSACHAADVL HPPKPANDDH GQENDCDDDN NGDEDEDEDD DDEENEDGDD VYRKRGFEGF 300 DADVGGIPPS ELREWFKKRA LQLLEERVGI EAEGFEIEKR RFKWQRFKSK KDRELERLRL 360 ENERMMLENE RMLMLVRQKE FELNSNPEEA SGGGYRMEVG RVQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020109897.1 | 0.0 | uncharacterized protein LOC109725206 | ||||
TrEMBL | A0A199VHV4 | 0.0 | A0A199VHV4_ANACO; Uncharacterized protein | ||||
STRING | XP_008782906.1 | 1e-104 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19470 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 8e-47 |
Link Out ? help Back to Top | |
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Phytozome | Aco015633.1 |