PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco015633.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Trihelix

Protein Properties

Length: 404aa MW: 44504.1 Da PI: 5.7147

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015633.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.7	4.2e-20	89	206	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............................lkkplWeevskkm.rergferspkqCkekwenlnkrykkikeg 67 +Wt++ v++Li+++ ++++ ++ +kk++W+ +s+ m +++g+++sp+qC++k+++lnkryk+++++ Aco015633.1 89 KWTDDIVRLLIRLVALVGDDPAAATesdggggapcsrrrphggaaasssssssalQKKGKWKTISRLMlERGGCRVSPQQCEDKFNDLNKRYKRLNDI 186 7999999999999995555555433344455555566666666666666777777***********778899******************** PP trihelix 68 ekkr.tsessstcpyfdqle 86 +++ +++++++ +++d+l+ Aco015633.1 187 LGRGtSCRVVENPSLLDSLT 206 66999*99999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0019	86	179	IPR001005	SANT/Myb domain
Pfam	PF13837	2.5E-15	87	232	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MENPMMGGGG GGGGGGILDF DPHHHHHHHL RHLVSHLPPT AASPSDDDDP TASAAADDDG 60 HGYGGGADAA RGGAKKGGSS SSAPWQRMKW TDDIVRLLIR LVALVGDDPA AATESDGGGG 120 APCSRRRPHG GAAASSSSSS SALQKKGKWK TISRLMLERG GCRVSPQQCE DKFNDLNKRY 180 KRLNDILGRG TSCRVVENPS LLDSLTHVTA KGKDDVRKIL SSKHLFYREM CAYHNGQRIP 240 SSACHAADVL HPPKPANDDH GQENDCDDDN NGDEDEDEDD DDEENEDGDD VYRKRGFEGF 300 DADVGGIPPS ELREWFKKRA LQLLEERVGI EAEGFEIEKR RFKWQRFKSK KDRELERLRL 360 ENERMMLENE RMLMLVRQKE FELNSNPEEA SGGGYRMEVG RVQ*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MENPMMGGGG GGGGGGILDF DPHHHHHHHL RHLVSHLPPT AASPSDDDDP TASAAADDDG  60
HGYGGGADAA RGGAKKGGSS SSAPWQRMKW TDDIVRLLIR LVALVGDDPA AATESDGGGG  120
APCSRRRPHG GAAASSSSSS SALQKKGKWK TISRLMLERG GCRVSPQQCE DKFNDLNKRY  180
KRLNDILGRG TSCRVVENPS LLDSLTHVTA KGKDDVRKIL SSKHLFYREM CAYHNGQRIP  240
SSACHAADVL HPPKPANDDH GQENDCDDDN NGDEDEDEDD DDEENEDGDD VYRKRGFEGF  300
DADVGGIPPS ELREWFKKRA LQLLEERVGI EAEGFEIEKR RFKWQRFKSK KDRELERLRL  360
ENERMMLENE RMLMLVRQKE FELNSNPEEA SGGGYRMEVG RVQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020109897.1	0.0	uncharacterized protein LOC109725206
TrEMBL	A0A199VHV4	0.0	A0A199VHV4_ANACO; Uncharacterized protein
STRING	XP_008782906.1	1e-104	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19470	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	8e-47

Link Out ? help Back to Top
Phytozome	Aco015633.1