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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco015492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18661.9 Da PI: 11.7942 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.3 | 6.5e-31 | 91 | 141 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss Aco015492.1 91 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 141 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.127 | 83 | 143 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-42 | 83 | 142 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 85 | 105 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-30 | 85 | 149 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 85 | 139 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.04E-39 | 85 | 146 | No hit | No description |
Pfam | PF00319 | 2.1E-27 | 92 | 139 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 105 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 120 | 141 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAPLFTIAPR LLFRLFSNKG RIRKGVFFFV VPSRIPNKGF PSLDQKNSPF CTPPLFSPRL 60 LPFLGLLEVR LLGWGEEEGA ERMVRGKTEI KRIENATSRQ VTFSKRRNGL LKKAFELSVL 120 CDAEVALIVF SPRGKLYEFS SSRFHRKMTK PRGDRSRTSS IQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213915 | 3e-54 | AC213915.1 Oryza minuta clone OM__Ba0240A18, complete sequence. | |||
GenBank | AC215814 | 3e-54 | AC215814.1 Oryza minuta clone OM__Ba0123B04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020084131.1 | 2e-99 | uncharacterized protein LOC109707344 isoform X2 | ||||
TrEMBL | A0A199ULK7 | 9e-49 | A0A199ULK7_ANACO; Agamous-like MADS-box protein AGL14 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 6e-36 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Aco015492.1 |