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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Aco015492.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family |
M-type_MADS |
Protein Properties |
Length: 164aa MW: 18661.9 Da PI: 11.7942 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Aco015492.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 97.3 | 6.5e-31 | 91 | 141 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
Aco015492.1 91 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 141
79***********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MAPLFTIAPR LLFRLFSNKG RIRKGVFFFV VPSRIPNKGF PSLDQKNSPF CTPPLFSPRL 60 LPFLGLLEVR LLGWGEEEGA ERMVRGKTEI KRIENATSRQ VTFSKRRNGL LKKAFELSVL 120 CDAEVALIVF SPRGKLYEFS SSRFHRKMTK PRGDRSRTSS IQN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3mu6_A | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-17 | 85 | 150 | 2 | 67 | Myocyte-specific enhancer factor 2A |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC213915 | 3e-54 | AC213915.1 Oryza minuta clone OM__Ba0240A18, complete sequence. |
GenBank | AC215814 | 3e-54 | AC215814.1 Oryza minuta clone OM__Ba0123B04, complete sequence. |