PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015166.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 830aa    MW: 91347.5 Da    PI: 6.1221
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015166.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-191876357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aco015166.1 18 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                 5679*****************************************************97 PP
2START173.71.1e-541623702205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  ++a  v e+l+d + W++++++++++ v+++g  g+++l +++
  Aco015166.1 162 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCAGVAARACGLVGIEPA-KVVEFLKDQPSWSRDCRSVDVVSVLTTGnnGTVELLYMQ 258
                  7899******************************************************.5556666666***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rd +  Ry+  l++g++v++++S++++q  p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s+++ 
  Aco015166.1 259 LYAPTTLAPaRDLWLMRYTSVLEDGSLVVCERSLNNTQGGPTmpsVQPFVRAEMLPSGYLIRPCDDGGSVIHIVYHMDLEPWSIPEVIRPLYESSTML 356
                  ****************************************99888899************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  +++t++ +l+++++
  Aco015166.1 357 AQRTTMTALRHLRQ 370
                  *********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7261377IPR001356Homeobox domain
SMARTSM003892.7E-161581IPR001356Homeobox domain
CDDcd000863.94E-171678No hitNo description
SuperFamilySSF466894.71E-171779IPR009057Homeodomain-like
PfamPF000468.9E-171876IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-192076IPR009057Homeodomain-like
CDDcd146866.31E-570109No hitNo description
PROSITE profilePS5084826.245152366IPR002913START domain
CDDcd088751.75E-75156372No hitNo description
SMARTSM002342.2E-39161371IPR002913START domain
SuperFamilySSF559619.06E-38161372No hitNo description
Gene3DG3DSA:3.30.530.202.9E-22161367IPR023393START-like domain
PfamPF018525.6E-52162370IPR002913START domain
PfamPF086701.2E-48686828IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MMVVSSCKEG KGGMDPGKYV RYTPEQVEAL ERLYHECPKP SSMRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES FRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSYFRQ  120
QTQNAAITTT DTSCDSVVTS SRHHLTPQHP PRDASPAGLL SIAEETLAEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCAGVAARA CGLVGIEPAK VVEFLKDQPS WSRDCRSVDV  240
VSVLTTGNNG TVELLYMQLY APTTLAPARD LWLMRYTSVL EDGSLVVCER SLNNTQGGPT  300
MPSVQPFVRA EMLPSGYLIR PCDDGGSVIH IVYHMDLEPW SIPEVIRPLY ESSTMLAQRT  360
TMTALRHLRQ IAHEGSHSIA TGWGRRPAAL RALSQRLGRG FSEAINGFAD EGWSAASNDG  420
ADDVTILVKN YGFTNEFSMC NAVLCAKASM LLQNVSPAML LRFLREHRSE WGDSNMDAFS  480
AAALRANSCN FSVPHIGPFG GQVILPLAHS LDNEELLEVL KLENIGYYRD ALVPRELLLL  540
QLCTGLDENA VGTWSELIFA PIDASLADDA PLLPSGFRII PIDSIMDTCS PSNRTLDLAS  600
TLEVGPTGTR VCGDPSGRYS ATRSVMTIAF QFAFESHLQE NVASMARHYV RSIISSVQRV  660
ALALSPSRIA SLGGLCAPPG SPEVLMLARW ICESYRGHSG VELLKPTTEG NEPLLKSLWH  720
HSDAVVCCSV KDAPIFMFAN QAGLDMLETT SVALQEITPE QIFDDNGKKT LCNEFPQIIQ  780
KGFACVQGGL CVSSMGRPVS YEKAVAWKVL NDEDDTHCIC FMFVNWSFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087984.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A199VIA60.0A0A199VIA6_ANACO; Homeobox-leucine zipper protein ATHB-15
STRINGXP_008791633.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]