PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco015162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 27636.5 Da PI: 4.4416 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 74 | 122 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa+++ +g Aco015162.1 74 YRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAARAVKG 122 9****998.**********843...6**********************98776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-12 | 72 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 73 | 131 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.84 | 73 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-35 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 73 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-11 | 74 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-16 | 74 | 108 | No hit | No description |
PRINTS | PR00367 | 9.7E-11 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MALTGQPRSS LSEPETSANS ASSSHSSLSS PSSTSSLARM LQNPATQLFK EEGGGGGAPI 60 RRRVRDSTNK HPAYRGVRMR NWGKWVSEIR EPRKKSRIWL GTFPTAEMAA RAHDAAARAV 120 KGAAAVLNFP ELADSLPRPA TLAPRDVQAA AALAAAMDPA PLDAAPAPAA PAPAPAAEED 180 EELGEIVELP RLGEEEDDDE EGARWCRVGS GEPELAFDDS FDPWAPWTVG ADGEVDDDAA 240 YGFLASDGCV PTTFGRGFLW N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 71 | 131 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020088012.1 | 0.0 | ethylene-responsive transcription factor ERF036-like | ||||
Swissprot | Q9LYD3 | 2e-53 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A199VHJ9 | 1e-113 | A0A199VHJ9_ANACO; Dehydration-responsive element-binding protein 3 | ||||
STRING | XP_006476039.1 | 1e-55 | (Citrus sinensis) | ||||
STRING | A0A087G6B7 | 1e-55 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-32 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco015162.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|