 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco015133.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 235aa MW: 26999.1 Da PI: 4.5892 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco015133.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.8 | 1.1e-19 | 33 | 86 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ +f++eq++ Le++Fe + ++ +++ +LAk+lgL+ rqV +WFqN+Ra++k
Aco015133.1 33 KKKRFSEEQIKSLESMFETQTKLEPRQKLQLAKELGLQPRQVAIWFQNKRARWK 86
5667*************************************************9 PP
|
| 2 | HD-ZIP_I/II | 121.8 | 3.5e-39 | 32 | 124 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kk+r+s+eq+k+LE++Fe+++kLep++K +la+eLglqprqva+WFqn+RAR+k+kqlE++y+aL++ yd l ++ ++L+ke++ L ++l++
Aco015133.1 32 NKKKRFSEEQIKSLESMFETQTKLEPRQKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYSALRSDYDLLLASFDSLKKEKHMLLKQLQK 124
59**************************************************************************************99987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MDGEDQLDHA AAAAEAALAA DDGSCCGSWL MNKKKRFSEE QIKSLESMFE TQTKLEPRQK 60
LQLAKELGLQ PRQVAIWFQN KRARWKSKQL EREYSALRSD YDLLLASFDS LKKEKHMLLK 120
QLQKLNGLLD KPQEGRSRCY GDSENADLNG ATDKRPNFQM KEESDARVVP YSDEEDKKFP 180
CLISEDEAEL YTVQQQACST LTSEVEDQFG FQTSWPSDQS CTSTQWWEFW PMNE*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF145730 | 2e-83 | AF145730.1 Oryza sativa homeodomain leucine zipper protein (Oshox6) mRNA, partial cds. |
| GenBank | AK059755 | 2e-83 | AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence. |
| GenBank | AK103160 | 2e-83 | AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence. |
| GenBank | AP005681 | 2e-83 | AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07. |
| GenBank | AP014965 | 2e-83 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 2e-83 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
| GenBank | CT830847 | 2e-83 | CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence. |
