PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015107.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 362aa    MW: 39688.1 Da    PI: 8.4007
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015107.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.51.4e-41100176278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC+adls+++eyhrrhkvCe+hsk+pvv+v+g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  Aco015107.1 100 CSVDGCKADLSKCREYHRRHKVCEAHSKTPVVIVAGREQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 176
                  **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.3E-3494161IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18897174IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-3999179IPR004333Transcription factor, SBP-box
PfamPF031101.9E-30100173IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEWDLKMPPP PWEVTTQTEP AAAPAPAPAA AGSSNPNRTE WSVDLKLNGL GDFNPNPNWR  60
AQFKTPAIAN PTAPASSSSS SSSSSKRGRA AINGAQSSSC SVDGCKADLS KCREYHRRHK  120
VCEAHSKTPV VIVAGREQRF CQQCSRFHLL VEFDEVKRSC RKRLDGHNRR RRKPQPDSVN  180
SGTLFTLHQG TRFSSYPLLF PTAPESNFNG IIKFENGALY NKQQNTATTA AATNSSHYYM  240
EERRPFHFAQ EITTESNKST KLFSDGLNRV IDPSECALSL LSSPALIPMA QPLHVSDFQY  300
GNIARFSNLT PDNVEVDGFS TVIVSDANRD AGIHYQSVYH LAGEEGSSNG TTAQALPFSW  360
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291001731184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156173KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093194.10.0squamosa promoter-binding-like protein 16
TrEMBLA0A199VJ850.0A0A199VJ85_ANACO; Squamosa promoter-binding-like protein 18
STRINGXP_008790766.11e-108(Phoenix dactylifera)
STRINGXP_008806431.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-43SBP family protein