PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015099.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CAMTA
Protein Properties Length: 859aa    MW: 98088 Da    PI: 6.8008
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015099.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1159.65.9e-50111272117
         CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                  ++e k+rwlk+ e+++iL+n+e +++t ++++rp+sgsl+L+nr+++r+fr DG+sw++k +gkt+ E+he+LK+ + +vl+cyYa++een++fqrr+
  Aco015099.1  11 HQEaKTRWLKPIEVLTILQNHEGFKITDKNPDRPPSGSLFLFNRRVLRNFRMDGHSWRRKGNGKTIAEAHERLKIANNDVLNCYYARGEENSSFQRRS 108
                  67779********************************************************************************************* PP

         CG-1  99 ywlLeeelekivlvhylev 117
                  yw+L+ ++++ivlvhy+ev
  Aco015099.1 109 YWMLDPAYSHIVLVHYREV 127
                  *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143771.3977133IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-6510128IPR005559CG-1 DNA-binding domain
PfamPF038599.8E-4513126IPR005559CG-1 DNA-binding domain
PfamPF018337.7E-7319394IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.7E-5319392IPR013783Immunoglobulin-like fold
SuperFamilySSF812966.12E-13319397IPR014756Immunoglobulin E-set
SuperFamilySSF484034.35E-15505604IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-15505604IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.645507599IPR020683Ankyrin repeat-containing domain
CDDcd002041.61E-6512599No hitNo description
PfamPF127962.2E-6519601IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0081540569IPR002110Ankyrin repeat
PROSITE profilePS5008810.472540572IPR002110Ankyrin repeat
SMARTSM000153.2655677IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.755656685IPR000048IQ motif, EF-hand binding site
PfamPF006120.22657677IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.47E-6658759IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.04711733IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.687713741IPR000048IQ motif, EF-hand binding site
PfamPF006120.043713732IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092734756IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487735763IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-4736756IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.595810839IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MLQGLDADKL HQEAKTRWLK PIEVLTILQN HEGFKITDKN PDRPPSGSLF LFNRRVLRNF  60
RMDGHSWRRK GNGKTIAEAH ERLKIANNDV LNCYYARGEE NSSFQRRSYW MLDPAYSHIV  120
LVHYREVEGE NIPGLVFNLS NESFSNSNQD TSRAQVHNFP RTSELTELYQ NSGSNGTAEE  180
VNSHLIMESF ETSNTFDWSE TFDLPFLPEV DESIQNSRLQ WSSDNEINYD YKDFVGQMPS  240
YDIENKNQQD LGLSDFEIKE SSEETFKDRF NEMRHKKNGH AEEAIIDIDS GLLMELNQLE  300
STLRTCSSFE MPQKQWFHIR EVSPECAFSS ERTKVIIIGD FLWKPPESKW AVSFGDVEVP  360
LEIIQQGVIR CHAPQHIIGK VNLFITNGNG EQCSEGRELV FLSKPGMYSS SSTYTQEVEV  420
KSREEQLLLL KLVKLLFGEN IGALTSRHDN NSEFDPVRNL TDIKDQSTSE NTMDSVVQEL  480
LKDKFEQWLR SKKIKENSEQ DCLLSKQDQC IIHMISGLGY AWALKPILNS GVSINYRDTL  540
GWTALHWAAH FGREKMVAAL LAAGASAGAV SHSTSQDPVG KTPASIASSN SHKGLAGYLS  600
EAELTSHLYT LATRESEISK CSDIAVDTIS QRSAYLYGGS EDQLSLKDSL EAVRNATQAA  660
ARIQAAFRAY SFRKRLRRAS LSRDEFGISL EDIHEISHAT KSFRAYHGDP KFEKAALSIQ  720
TNYRCWKGRK EFLTTRKHVV KIQAHVRGRQ ARKHYKEFLS TVSILEKVVL RWHRRGVGLR  780
VFHGQLEPMD KEDEDDILKA FRKQKVDASH DKAISRVISM VKSPEARQQY RRMLERYQQA  840
KDDLADYKDQ GSDNHEAK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094302.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG21e-146CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A199VHW30.0A0A199VHW3_ANACO; Calmodulin-binding transcription activator 4 (Fragment)
STRINGXP_008790758.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-133Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]