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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22553.4 Da PI: 10.5671 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.6 | 2.2e-32 | 119 | 177 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrC++ +C+vkk+versa+dp++v++tYeg+H h+ Aco014348.1 119 LDDGYKWRKYGQKVVKNTQHPRSYYRCSQDNCRVKKRVERSADDPRMVITTYEGRHVHS 177 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 104 | 177 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-29 | 111 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.493 | 114 | 179 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-37 | 119 | 178 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 120 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVAHHQIIKL LLLQLLQPGE QALTYGHGRK LEGPLLSSKR TIIGAEHQIK MNANNNNNNN 60 NNKDNNNNNT NNSSVNYKST SNTINALSVG GVRMKKVKKR RKVRDPRFCF KTMSEVDVLD 120 DGYKWRKYGQ KVVKNTQHPR SYYRCSQDNC RVKKRVERSA DDPRMVITTY EGRHVHSPSH 180 EDVDQAQAAS QVSFFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-28 | 110 | 176 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-28 | 110 | 176 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | KVKKRRKVR |
2 | 97 | 101 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087978.1 | 1e-147 | probable WRKY transcription factor 13 | ||||
Refseq | XP_020087979.1 | 1e-147 | probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 4e-57 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A199UXG9 | 5e-83 | A0A199UXG9_ANACO; Putative WRKY transcription factor 13 | ||||
STRING | XP_008793465.1 | 1e-70 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 4e-50 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Aco014348.1 |