PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 18533.2 Da PI: 8.5178 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00082 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Aco014244.1 46 FECKTCNRRFPSFQALGGHRASH 68 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.17E-9 | 44 | 111 | No hit | No description |
Pfam | PF13912 | 2.4E-13 | 45 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.385 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-9 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.912 | 89 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MKRSFGFVGE GEGEGEGESI GTMAGVLMLI SRSSGGRGHV CVDRVFECKT CNRRFPSFQA 60 LGGHRASHKK PRPGPAAAVD GDGAKPKMHE CSICGLEFAI GQALGGHMRR HRPVAAATAA 120 SAVAPAEFGF PRGALSEKKK RELWFDLNVS PPEAAEDAAV LGFTFELLDK GPIVVG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087452.1 | 1e-124 | zinc finger protein ZAT12-like | ||||
Refseq | XP_020101761.1 | 1e-124 | zinc finger protein ZAT12-like | ||||
Swissprot | Q681X4 | 6e-27 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A199V4X2 | 1e-123 | A0A199V4X2_ANACO; Zinc finger protein ZAT5 | ||||
STRING | XP_008807730.1 | 8e-45 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 3e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco014244.1 |
Publications ? help Back to Top | |||
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