PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco014163.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 280aa MW: 31375.1 Da PI: 8.1416

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco014163.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Aco014163.1 66 YSCSFCRREFRSAQALGGHMNVH 88 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.98E-6	63	92	No hit	No description
PROSITE profile	PS50157	11.219	66	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MHSIIMEQTK YNWMWARRQL SEGPLLGSSI QRIATPSSYH ESWEEQAFEK DSIGHLGGYT 60 WPPRSYSCSF CRREFRSAQA LGGHMNVHRR DRARLKQLSS SPSSIEDQEN NQQDRQNTCT 120 PLGHAHQVSS LPYSTPSNPN CGAVASLISS RVSEDSDPTL VSPPSYSSSL IKENTKEQLL 180 PAEQSLSDPA QVVMLELNLG RENSKQREAN FCRKLRDKSR DEEEIISSKR RCIDAIFPLV 240 MKSSPGEQQN IRSQVLKISP GPVGELDLEL RLGSHPKAK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	5e-13	61	88	2	29	superman protein
2l1o_A	5e-13	61	88	2	29	Transcriptional regulator SUPERMAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020101340.1	1e-166	probable transcriptional regulator RABBIT EARS
TrEMBL	A0A2H3X4C3	3e-83	A0A2H3X4C3_PHODC; zinc finger protein 11-like
STRING	XP_008778130.1	8e-84	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9594	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	3e-27	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aco014163.1