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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013644.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28251.4 Da PI: 9.8024 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.2 | 8.8e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r +t kRr+g+lKK +ELSvLC++++++i++++ Aco013644.1 11 IANDATRRTTMKKRRKGLLKKVHELSVLCGVDACLIVYGT 50 8899**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.759 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-19 | 1 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.22E-15 | 2 | 88 | No hit | No description |
PRINTS | PR00404 | 6.2E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-16 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MARKKVKLMW IANDATRRTT MKKRRKGLLK KVHELSVLCG VDACLIVYGT PSDRFPADIL 60 PSEPRGVARV VTQFRGLPEG ERRRKMVSQE SFLRQRVGKM RDAQRRQLRE NRQGELLALV 120 AEGLSGRRSS FSNLAQVEEV ASLTWMLDAK FKSVYDQLET QLRQLYSATP EGGVPLQAAA 180 EEAAVRVVDH DPQSAAAAAA AAVEVLNRHD SSLLPPADTP TPQPPMVGPW AELQTPYLDP 240 YVADPWLDSF YPF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLMWIANDATRRTTMKKRR |
2 | 21 | 25 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101462.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A199UHJ4 | 1e-114 | A0A199UHJ4_ANACO; Agamous-like MADS-box protein AGL80 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-29 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Aco013644.1 |