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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013643.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 605aa MW: 65175.5 Da PI: 6.7608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52 | 1.3e-16 | 403 | 449 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Aco013643.1 403 VHNLSERRRRDRINEKMRALQELIPNC-----NKTDKASMLEEAIEYLKTLQ 449 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-21 | 396 | 461 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.508 | 399 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-21 | 402 | 475 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.10E-17 | 402 | 453 | No hit | No description |
Pfam | PF00010 | 3.9E-14 | 403 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-18 | 405 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MPLSEFLLKT TKSKPGTAQS KMPIPNSSSS DPFSISDHEF AELLWENGQI VLHGHASRSS 60 KKSWAAASAA DHPEKAPAKD NVDSVDAKNE QLGADLSVHQ EDDMVPWINF RIDDESLDAD 120 PVHNDFYSEF LEDIGVLGQE AKSPPNAPQE IPSKGAPAAS ERGRGNKPNQ LIQLSQNCQS 180 AVTNNNSRVS ELGNGGGKAQ MGYCMELVKN TRLAPRPNTG VNFVNFPLFS RPHAVKINDR 240 ARVEEKAAAA PVNRNLVESS SGVKSVAGIK ALPRKLELEK PDAPGRQHVK VPSERIEANR 300 ERGEDHETEK DDKNAAAIKD CSFAKPETEK DPVAVVASSS VCSVNSAGIE SYEPKNNREK 360 RKVSEREESS GEQSDDLEDE SVGTKKPANG RGTGAKRSRA AEVHNLSERR RRDRINEKMR 420 ALQELIPNCN KTDKASMLEE AIEYLKTLQL QLQMMSMRNG MYMPTPMMLP PGMQHINGPA 480 MAHFSPMGVG MGMGMGMGMG MGYGMHVNGS PGCSLIPVQP MHGQQFPCPA IAGQAALHRM 540 MLGPANPPVF GAIAPHQLSS PPCHVVKGNT APDVTMPAAA PAPPTSDPAA APVSRDQKEE 600 GKNL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 407 | 412 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101598.1 | 0.0 | transcription factor PIF3-like | ||||
Refseq | XP_020101599.1 | 0.0 | transcription factor PIF3-like | ||||
TrEMBL | A0A199UI26 | 0.0 | A0A199UI26_ANACO; Transcription factor PIF3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-40 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Aco013643.1 |