PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 28784.2 Da PI: 7.5123 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 20 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s ++ r +lg+f+t+e+Aa+a++ a+++l+g+ Aco013629.1 20 KFIGVRQRP-SGRWVAEIKDSS---QKVRLWLGTFDTPEDAARAYDDAARSLRGA 70 899******.7*********42...36*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.45E-18 | 19 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-20 | 20 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-34 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.954 | 20 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-13 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-7 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-7 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAGPTEGEKA AATRAPPPKK FIGVRQRPSG RWVAEIKDSS QKVRLWLGTF DTPEDAARAY 60 DDAARSLRGA NARTNFGSSS SSSSSSSSTS GGGRVAEEDL PPFSFEDGAD ADADAEAEAE 120 DLIDLLKAKL LEGRTASRQL PSQQGEISGR GAHQRPPGLP CWWPSAASAS APASASASCN 180 STDGQNTKST GVRPLSGLEK RLLSSSGVAK HSSSSSSTRD YSTGDYSWIT GNRSALSSSA 240 LQPTLHGRSS SDGSAISFQE AAAGSFASSD GAKRPRLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 20 | 76 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101464.1 | 0.0 | dehydration-responsive element-binding protein 2E-like | ||||
TrEMBL | A0A199UII0 | 1e-140 | A0A199UII0_ANACO; Ethylene-responsive transcription factor RAP2-11 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Aco013629.1 |