 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco013561.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
LBD |
| Protein Properties |
Length: 227aa MW: 24183.5 Da PI: 8.3242 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco013561.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 101.6 | 7.3e-32 | 27 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
+C aC+ lrr+C ++Cv+ap+fp +qp++fa+v++++G+ nv++ll++lp+e+r++a++sl+yeA +++rd v Ga+gv++ ++++l++l+ el ++
Aco013561.1 27 PCTACRQLRRGCRPGCVFAPCFPPSQPNRFAIVRRVYGVGNVQRLLEELPPERRPAATDSLAYEASMQLRDRVFGAAGVVSLYEHRLHSLQLELLCAR 124
7******************************************************************************************9998877 PP
DUF260 99 ee 100
+e
Aco013561.1 125 AE 126
65 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MANEAAANSA LAGGVAAAAG RPAIVHPCTA CRQLRRGCRP GCVFAPCFPP SQPNRFAIVR 60
RVYGVGNVQR LLEELPPERR PAATDSLAYE ASMQLRDRVF GAAGVVSLYE HRLHSLQLEL 120
LCARAELSTY ECSNRNDANR VPQITNQKFS KVCGGRGGGW GDGWYEAMRV EGCVSEAKIA 180
ERLAAATDAA VVSIRPVEDR IAATMTATAV AKSSNQIEDA ANNQII*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 1e-33 | 17 | 132 | 1 | 116 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 1e-33 | 17 | 132 | 1 | 116 | LOB family transfactor Ramosa2.1 |
