![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco013397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 384aa MW: 40504.7 Da PI: 8.886 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.7 | 2.2e-06 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F r nL+ H r+H Aco013397.1 72 YVCEICKKGFQRDQNLQMHRRRH 94 9*********************9 PP | |||||||
2 | zf-C2H2 | 14.7 | 9.2e-05 | 159 | 179 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ + +s++k H++t+ Aco013397.1 159 CGRCGRAYAVQSDYKAHLKTC 179 *******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.26E-6 | 71 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 72 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0051 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 68 | 121 | 151 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.26E-6 | 152 | 177 | No hit | No description |
SMART | SM00355 | 280 | 157 | 184 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MLASSFSSPS TAAPPIDPPS TLQHDSNAVA AAATIAAAST ATKRKRRPAG TPDPDAEVVS 60 LSPRTLLESD RYVCEICKKG FQRDQNLQMH RRRHKVPWKL AKRTSPEAGG GGGGRRRQRV 120 YVCPEPNCLH HEAGHALGDL VGIKKHFRRK HGGRRQWGCG RCGRAYAVQS DYKAHLKTCG 180 TRGHSCDCGR VFSRVESFIE HQDECTAGAG TGAPRNELRT PRSAAAASTP TPLPVDVDAN 240 SCTAAAVAAA VAVAPGPTVE LQLLPAAATI PASPSSEHSG DAELLRLSIG PVLDVGKELA 300 RLAVADKAAA DEERELAAEQ AAAAEREYSE AVAVRQRARA ELEKAIAVRD CAARRVAAVL 360 GQLTCHTCRA SHVRAGESSV DVP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-16 | 153 | 218 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 2e-16 | 153 | 218 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT837698 | 3e-71 | CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence. | |||
GenBank | JQ681528 | 3e-71 | JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020105115.1 | 0.0 | protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | Q9C9X7 | 1e-112 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A2H3YFX8 | 1e-123 | A0A2H3YFX8_PHODC; protein SHOOT GRAVITROPISM 5-like | ||||
STRING | XP_008798170.1 | 1e-124 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-78 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco013397.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|