PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 384aa MW: 40504.7 Da PI: 8.886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013397.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.2e-06	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F r nL+ H r+H Aco013397.1 72 YVCEICKKGFQRDQNLQMHRRRH 94 9*********************9 PP
2	zf-C2H2	14.7	9.2e-05	159	179	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ + +s++k H++t+ Aco013397.1 159 CGRCGRAYAVQSDYKAHLKTC 179 *******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.26E-6	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	72	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0051	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.198	72	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	68	121	151	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.26E-6	152	177	No hit	No description
SMART	SM00355	280	157	184	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MLASSFSSPS TAAPPIDPPS TLQHDSNAVA AAATIAAAST ATKRKRRPAG TPDPDAEVVS 60 LSPRTLLESD RYVCEICKKG FQRDQNLQMH RRRHKVPWKL AKRTSPEAGG GGGGRRRQRV 120 YVCPEPNCLH HEAGHALGDL VGIKKHFRRK HGGRRQWGCG RCGRAYAVQS DYKAHLKTCG 180 TRGHSCDCGR VFSRVESFIE HQDECTAGAG TGAPRNELRT PRSAAAASTP TPLPVDVDAN 240 SCTAAAVAAA VAVAPGPTVE LQLLPAAATI PASPSSEHSG DAELLRLSIG PVLDVGKELA 300 RLAVADKAAA DEERELAAEQ AAAAEREYSE AVAVRQRARA ELEKAIAVRD CAARRVAAVL 360 GQLTCHTCRA SHVRAGESSV DVP*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MLASSFSSPS TAAPPIDPPS TLQHDSNAVA AAATIAAAST ATKRKRRPAG TPDPDAEVVS  60
LSPRTLLESD RYVCEICKKG FQRDQNLQMH RRRHKVPWKL AKRTSPEAGG GGGGRRRQRV  120
YVCPEPNCLH HEAGHALGDL VGIKKHFRRK HGGRRQWGCG RCGRAYAVQS DYKAHLKTCG  180
TRGHSCDCGR VFSRVESFIE HQDECTAGAG TGAPRNELRT PRSAAAASTP TPLPVDVDAN  240
SCTAAAVAAA VAVAPGPTVE LQLLPAAATI PASPSSEHSG DAELLRLSIG PVLDVGKELA  300
RLAVADKAAA DEERELAAEQ AAAAEREYSE AVAVRQRARA ELEKAIAVRD CAARRVAAVL  360
GQLTCHTCRA SHVRAGESSV DVP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-16	153	218	3	68	Zinc finger protein JACKDAW
5b3h_F	2e-16	153	218	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837698	3e-71	CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence.
GenBank	JQ681528	3e-71	JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020105115.1	0.0	protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-112	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A2H3YFX8	1e-123	A0A2H3YFX8_PHODC; protein SHOOT GRAVITROPISM 5-like
STRING	XP_008798170.1	1e-124	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-78	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Aco013397.1

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]