PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 597aa MW: 63185.2 Da PI: 9.374

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012999.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Aco012999.1 107 FVCEVCNKGFQREQNLQLHRRGH 129 89*******************88 PP
2	zf-C2H2	12.5	0.00046	183	205	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Aco012999.1 183 WKCDKCSKRYAVQSDWKAHSKTC 205 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.3E-6	106	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.08E-7	106	129	No hit	No description
SMART	SM00355	0.0041	107	129	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.9E-5	107	129	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	107	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	300	148	178	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	171	204	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.08E-7	178	203	No hit	No description
SMART	SM00355	140	183	203	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MAAAASFFGI REDPDPRNQM QQPPPPPPPL QQHQPQLPPS SQSVLGSTAT AAAAAAAAGS 60 SQPVAPQKKK RNQPGNPSKY PHSMSIAYPD AEVIALSPKT LMATNRFVCE VCNKGFQREQ 120 NLQLHRRGHN LPWKLKQKNP KEVRRRVYLC PEPTCVHHDP SRALGDLTGI KKHYCRKHGE 180 KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQETAR 240 IPPGLNPIGS HLYGNSNMSL GLSQMSSQMS SLQDLLSSSA FRPPPPPPHP HSSSPFFLGG 300 GGGGASQEFH NEDPQPQQHS LLQSKPFHSL MQLPDLQGNA NNSSSNSGAV AAANMFNLGF 360 FSNSSNAIPM NNSVPDQFNG GGNNNGSNHS ESGSLFPGNL IAGDHHIGTG ISQMYNNSMR 420 GESVLPQMSA TALLQKAAQM GATTSGGGGG GSSLLRGFGS TYSNSGANKP GVFRSSSFGE 480 SSRAQVEHEN HFQDLMNSLA NASSNMFGGS GGGGGGVAAA FGGNYMSSGQ EQETGLGGFD 540 RLTRDFLGVG GSMVRGMGGG ISQREQHHGL DMGSLDSEMK SGGAASSRSF GSGNLQ*

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MAAAASFFGI REDPDPRNQM QQPPPPPPPL QQHQPQLPPS SQSVLGSTAT AAAAAAAAGS  60
SQPVAPQKKK RNQPGNPSKY PHSMSIAYPD AEVIALSPKT LMATNRFVCE VCNKGFQREQ  120
NLQLHRRGHN LPWKLKQKNP KEVRRRVYLC PEPTCVHHDP SRALGDLTGI KKHYCRKHGE  180
KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQETAR  240
IPPGLNPIGS HLYGNSNMSL GLSQMSSQMS SLQDLLSSSA FRPPPPPPHP HSSSPFFLGG  300
GGGGASQEFH NEDPQPQQHS LLQSKPFHSL MQLPDLQGNA NNSSSNSGAV AAANMFNLGF  360
FSNSSNAIPM NNSVPDQFNG GGNNNGSNHS ESGSLFPGNL IAGDHHIGTG ISQMYNNSMR  420
GESVLPQMSA TALLQKAAQM GATTSGGGGG GSSLLRGFGS TYSNSGANKP GVFRSSSFGE  480
SSRAQVEHEN HFQDLMNSLA NASSNMFGGS GGGGGGVAAA FGGNYMSSGQ EQETGLGGFD  540
RLTRDFLGVG GSMVRGMGGG ISQREQHHGL DMGSLDSEMK SGGAASSRSF GSGNLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-35	179	241	3	65	Zinc finger protein JACKDAW
5b3h_F	9e-35	179	241	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374308	0.0	AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020115255.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_020115256.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-123	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A199VEY6	0.0	A0A199VEY6_ANACO; Protein indeterminate-domain 5, chloroplastic
STRING	XP_008812809.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-110	indeterminate(ID)-domain 4

Link Out ? help Back to Top
Phytozome	Aco012999.1

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]