PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | B3 | ||||||||
Protein Properties | Length: 138aa MW: 15711 Da PI: 4.8006 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.7 | 2.9e-15 | 26 | 113 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++s + rlv+pk+f e +++++ ltl + ++++Wev+++ +++ +r +++GWk+F+ +n+L+ gD +vF+l+++++ ++ v+v+ Aco012957.1 26 IISKSQIQQPFRLVVPKEFR-EL--LPPSPVWLTL-SCKNKTWEVRYCGDRYLKR--FETGWKRFAIENNLEIGDGCVFELMDNENLNFGVRVL 113 556667777799*******7.33..3567777774.5699*******88888888..89**********************9988887777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.82E-19 | 18 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-19 | 19 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.55E-18 | 21 | 114 | No hit | No description |
SMART | SM01019 | 9.0E-9 | 23 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.872 | 23 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-12 | 27 | 112 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MSAEPAECKA QDEVVPLSGN PYFTIIISKS QIQQPFRLVV PKEFRELLPP SPVWLTLSCK 60 NKTWEVRYCG DRYLKRFETG WKRFAIENNL EIGDGCVFEL MDNENLNFGV RVLKGEIPSL 120 VRNIEDGRSS DSPIMID* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085306.1 | 1e-97 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_020085307.1 | 1e-97 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A199V054 | 2e-96 | A0A199V054_ANACO; B3 domain-containing protein | ||||
STRING | XP_008776698.1 | 2e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-09 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco012957.1 |