PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012921.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 138aa    MW: 14652.6 Da    PI: 9.0414
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012921.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.31.4e-2080114135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+++TplWR gpdg+k+LCnaCG++yrk+++
  Aco012921.1  80 CAWCGVISTPLWRTGPDGPKSLCNACGIRYRKEEM 114
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-1474124IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.53274110IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-1377119No hitNo description
Gene3DG3DSA:3.30.50.105.5E-1578114IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.99E-1279134No hitNo description
PfamPF003203.7E-1880113IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEYYNFLGLS SSSSSSASAS SSSASSCSSI LSSSCLYSSS VSVNGVKVEK DLIGVLEERG  60
KYAGLDVSLS LRPPAPAKKC AWCGVISTPL WRTGPDGPKS LCNACGIRYR KEEMRLNTNL  120
TLGPSNPNAR RPRLFYD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385185.15e-27PREDICTED: GATA transcription factor 4-like
TrEMBLM0RT571e-25M0RT57_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17770_0012e-26(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-16GATA transcription factor 19