PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012860.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 316aa    MW: 32627.7 Da    PI: 9.5183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-19136186255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Aco012860.1 136 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 186
                  8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.25E-30135194No hitNo description
Gene3DG3DSA:3.30.730.103.1E-32135194IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-23136196IPR016177DNA-binding domain
PROSITE profilePS5103224.21136194IPR001471AP2/ERF domain
PfamPF008471.4E-13136186IPR001471AP2/ERF domain
SMARTSM003809.2E-38136200IPR001471AP2/ERF domain
PRINTSPR003676.8E-11137148IPR001471AP2/ERF domain
PRINTSPR003676.8E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSQMTGHSAG DLDLHLESIR HLLLDDLEMP SAAVMSLPPQ GGGGGPVYCR SSSFGSLVAA  60
QWGELPFRVD DSDDMVVLGA LRDAISQGWL PDGPPNPDPL PAAATAADAA PTPTPTPAPM  120
PQTPTQPRAA AAKGKHYRGV RQRPWGKFAA EIRDPAKNGA RVWLGTFETA EDAALAYDRA  180
AYRMRGSRAL LNFPLRIGSH ASEPAPAPAS PSSSKRSSPE PSSSTSSSSS SSSSSSSAIS  240
SPRSPSSPPK RRKRGEAAAA SMAMFPAPAV APNSAEIPVQ VTVPVQAHTG LGFGARPVEF  300
PAGMQLTRVG QLLVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-41132199168ATERF1
3gcc_A1e-41132199168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275181e-54KJ727518.1 Zea mays clone pUT5377 AP2-EREBP transcription factor (EREB198) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083621.10.0ethylene-responsive transcription factor 2-like
TrEMBLA0A199W6901e-118A0A199W690_ANACO; Ethylene-responsive transcription factor 2
STRINGXP_008813598.11e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-39ethylene responsive element binding factor 1