PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012822.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 372aa    MW: 40161.7 Da    PI: 8.7722
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012822.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40132209178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC++ l +ak+yh+rhkvC+vh+kap+v+v g eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Aco012822.1 132 RCQVEGCDKSLVDAKDYHKRHKVCDVHAKAPKVIVLGAEQRFCQQCSRFHVISEFDDAKRSCRRRLAGHNERRRKSNT 209
                  6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.2E-33129194IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.257130207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.11E-38131210IPR004333Transcription factor, SBP-box
PfamPF031102.1E-31133206IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MESGGGGGKS GHGGSSWGGS WELGNWTSAA VAANFPACYN AQGLEIAASA SASASRSAFP  60
DRAGVPLEGG DHAAEISQCA HRSFRSHHLT CLKLGKRHYY EEERLCGGAS AAAGKREKAA  120
AAAAAAGTPF PRCQVEGCDK SLVDAKDYHK RHKVCDVHAK APKVIVLGAE QRFCQQCSRF  180
HVISEFDDAK RSCRRRLAGH NERRRKSNTH DSLIRNPSSH SIEGTIMGPR FSHASNSPAR  240
ALSLLSSKAA SLPWVSPSDL SSRSSAALRE LIEENRAALL SRQLLSNRSD LPNQGPTNHI  300
AFPHWPQQNQ VVSQFPRLAD GWDHLQGAGA HVTLDLMQVP NPSFGAIPRR SRAKDGEEDC  360
SDIWKSWEDA HV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301332061184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084066.10.0squamosa promoter-binding-like protein 7
SwissprotQ01JD11e-68SPL7_ORYSI; Squamosa promoter-binding-like protein 7
SwissprotQ7XT429e-69SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A199UT850.0A0A199UT85_ANACO; Squamosa promoter-binding-like protein 7
STRINGXP_008796104.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.16e-36squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]