PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012562.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 295aa    MW: 32455.1 Da    PI: 9.559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012562.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20124173255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +grW+AeIrdp++   rkr++lg+f+taeeAa  ++ a+ +l+g
  Aco012562.1 124 RFRGVRRRP-WGRWAAEIRDPTQ---RKRVWLGTFDTAEEAATVYDSAAIRLKG 173
                  79*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.7E-4710292IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.71E-30123182No hitNo description
SuperFamilySSF541712.42E-22124182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-30124181IPR001471AP2/ERF domain
SMARTSM003802.4E-39124187IPR001471AP2/ERF domain
PfamPF008472.2E-13124173IPR001471AP2/ERF domain
PROSITE profilePS5103224.698124181IPR001471AP2/ERF domain
PRINTSPR003672.2E-10125136IPR001471AP2/ERF domain
PRINTSPR003672.2E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDPSRCSGMG RDEAEFSDHV VALRKTIRSA GRSRSAPRIV RIYVADPDAT DSSSGDDEPR  60
RLLPRRRWRR RRRVRRHVRE IEIGVAPAPP APAPVPRRRG VKVSRPLEKE AEEGCGGGGG  120
GEKRFRGVRR RPWGRWAAEI RDPTQRKRVW LGTFDTAEEA ATVYDSAAIR LKGPNAVTNF  180
PAPDPPSTSP NPNPNPNPNP NPNDAAPSNG DAASNRSPTS VLRYTEEGTT APFAPFLDGE  240
TDPFGFGLGF PLPLETPFPA PFHLTDFYGP QRHFWEAEFG EFDADVFAQE IAAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19112181272Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16474RRRWRRRRRVR
26572RRWRRRRR
36875RRRRRVRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101247.10.0pathogenesis-related genes transcriptional activator PTI6-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.14e-18cytokinin response factor 3