PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012493.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 177aa MW: 19657.3 Da PI: 6.8596

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012493.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.8e-44	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la+++ Aco012493.1 10 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRGDAASSLVYEANARVRDPVYGCVGAISYLQNQVAQLQMQLAMAQ 107 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Aco012493.1 108 AE 109 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.861	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDRKTGGSSP CASCKLLRRR CAKDCIFAPY FPPDDPHKFA IVHKVFGASN VSKMLQELPV 60 HQRGDAASSL VYEANARVRD PVYGCVGAIS YLQNQVAQLQ MQLAMAQAEI LCVQMQQETP 120 FAREQKIGID DDDDHDDKHF MLQHSGFSHG VNQFMSFSSP GTNVVQEPLK RESLWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-49	6	111	7	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-49	6	111	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020102144.1	1e-131	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	8e-78	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A199VID9	1e-129	A0A199VID9_ANACO; LOB domain-containing protein 12
STRING	VIT_06s0004g07200.t01	6e-87	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-69	LBD family protein

Link Out ? help Back to Top
Phytozome	Aco012493.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]