PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012252.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YA
Protein Properties Length: 298aa    MW: 31696.6 Da    PI: 10.224
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012252.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.64.3e-33154210158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +ksrkpylheSRh+hA+rR+RgsgGrF
  Aco012252.1 154 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKSRKPYLHESRHQHAMRRARGSGGRF 210
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.2E-38152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.992153213IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.8E-29155210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.4E-25156178IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860158178IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.4E-25187210IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MESRHVGTNL VEPGVQSVVP SAVVVQPWWR GPPAFGVAQP LGGSTPKASQ SQMGDGANGD  60
VGSQTHSSGE QKAGSIGQEN QLLPPASSVL APGLPEFVPQ TQLELGQSIA CAPFPYSDPY  120
FTGVMTPYGT QALMQSQFIG MPHTRMPLRL EMAEEPVYVN AKQYHGILRR RQSRAKAELE  180
KKVIKSRKPY LHESRHQHAM RRARGSGGRF LNTKKAEGNA ADSQQAEKGM NALPTQSAAS  240
SASEGLPSDS SGEVAVITGT RISSGNDSPH SRFHRSSIQS KSSGIPVNRP PDRAVAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21154217265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6620822e-65KM662082.1 Ananas bracteatus clone 45406 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092427.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_020092436.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_020092445.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_020092454.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_020092461.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_020092469.10.0nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A199VBK80.0A0A199VBK8_ANACO; Nuclear transcription factor Y subunit A-1
STRINGXP_008790783.14e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-50nuclear factor Y, subunit A9