PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012234.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 936aa    MW: 103601 Da    PI: 6.2418
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012234.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22132233199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  Aco012234.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVNGKRLVAGDSVLFI--RDEKQQ 225
                  99*****************************954.4444.49************************************************..568888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aco012234.1 226 LLLGIRRA 233
                  9****997 PP
2Auxin_resp120.71.1e-39258341183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFvv+++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdld++rW+nS+Wr+L+
  Aco012234.1 258 AAHAAANHSPFTVFYNPRASPSEFVVPFAKYQKAVYgNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSIRWKNSQWRNLQ 341
                  79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-44120261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41124247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-19131223No hitNo description
SMARTSM010192.9E-22132234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773132234IPR003340B3 DNA binding domain
PfamPF023627.1E-21132233IPR003340B3 DNA binding domain
PfamPF065079.5E-35258341IPR010525Auxin response factor
PfamPF023098.1E-9799886IPR033389AUX/IAA domain
PROSITE profilePS5174526.893801886IPR000270PB1 domain
SuperFamilySSF542774.81E-7814879No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MKGPASSTVA AAEAGGGSEV ERRAINAELW YACAGPLVNL PPVGSLVVYF PQGHSEQVAA  60
SMQKDIDAHV PNYPNLPSKL ICLLHNVTLH ADPETDEVYA QMTLQPVNTY DKEALQLSEL  120
ALKQTKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELQARDLHDN  180
LWTFRHIYRG QPKRHLLTTG WSLFVNGKRL VAGDSVLFIR DEKQQLLLGI RRANRQPTNI  240
SSSVLSSDSM HIGILAAAAH AAANHSPFTV FYNPRASPSE FVVPFAKYQK AVYGNQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDSI RWKNSQWRNL QVGWDESAAG ERRNRVSLWE  360
IEPVAAPFFI CPPPFFRAKR PRQPGMPDDE SSEMENLFKR AMPWLGEEIC IKDPQTQSTI  420
MPGLSLVQWM NMQQNGSSLS NATMQTDYLR SLTGPVGPNL GPADLSRQLG LQAHHLLQQQ  480
NNVQFNASRL PQQTQQQIDQ LSKVSVPLNQ LGTVSRPNPE IQDISCEARH QPVNQPLPPN  540
TIGAQHSVLT DDIPSCSTSP STNNGGVLVQ SILNRTQSRS MINTTEKTSQ SAVTILSSNP  600
MEAVVGSPTI SKDLPPKPLN SNIKPCTPLP KIQNHGPVGP QTQHMYNTPQ TDYLDTTSSA  660
TSVCLSQPDG PLQQGYSPLS SFNQPTMYRD VPPECEAQVA DPRNNVLFGV NIDGPLGLPL  720
TTDALLTNGI ESGKYQNNTP GNVVANYNTS RDAQQELSSS MVSQPFGVAD MAFNSIDSTI  780
TDNSFLNRNS WQPAPPLQRM RTYTKVHKRG AVGRSIDITR YSGYDELKQD LARMFSIEGQ  840
LEDRQRVGWK LVYVDHEEDV LLVGDDPWEE FVNCVRYIKI LSPQEVQQMS LEGEFRHNNI  900
LPNQACSSSE NGGNAWRGPQ YDHNNPSAGS YEQLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691836244388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083483.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0D9WTU40.0A0A0D9WTU4_9ORYZ; Auxin response factor
STRINGLPERR06G22130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19