PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 349aa MW: 38789.1 Da PI: 4.6211 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg++ t+eeAa+a++a +++++g Aco012157.1 116 QYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNTPEEAARAYDAEARRIRG 165 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-37 | 116 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.46E-32 | 116 | 174 | No hit | No description |
PROSITE profile | PS51032 | 24.25 | 116 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 116 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 116 | 174 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-12 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MCGGAIISGY VPAAQSRGLT NADFMWPGLK KTTQKEGKKH YPAEVGADFG FDADFDFDFD 60 ADFAEFEDEP GEVSEDEPFF VDTFKAPFLR DAPAALKAVE YHRPAAKSAK RKRKNQYRGI 120 RRRPWGKWAA EIRDPRKGVR VWLGTYNTPE EAARAYDAEA RRIRGKKAKV NFPDESPSSA 180 QKCSPKPTGI SSSNLVPPEK LNLNPALNHP NDPNSCFFST FDFIEEKAPI IELSENPSSF 240 AAIKPVSPPL SDVGSNSFDS YYDWENEAEK MKSSIGEAVP VNEANISVKL FEDTNAFESY 300 IKLLQLPYFE ESSDDSIGSI LSNDVTQDIV TDANLWGFDD LRTLSSVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-20 | 115 | 175 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 123 | KRKRKNQYRGIRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM663303 | 1e-123 | KM663303.1 Ananas bracteatus clone 47635b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020112276.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A199VS74 | 0.0 | A0A199VS74_ANACO; Ethylene-responsive transcription factor 1 | ||||
STRING | XP_008784363.1 | 1e-100 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 5e-32 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Aco012157.1 |