PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012028.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 658aa    MW: 74138.4 Da    PI: 5.5302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012028.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13460506455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h   ErrRR+++N++f  Lr l+P+ +      K++Ka+iL  ++eY+++L+
  Aco012028.1 460 SHVLSERRRREKLNEKFLILRNLVPSiS------KVDKASILGDTIEYLRELE 506
                  79999*********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4821210IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.888456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-18458523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-14459510No hitNo description
Gene3DG3DSA:4.10.280.108.5E-19460523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-11460506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MCREMAAAPP TKDESPEEHF RKQLAATVRQ IQWSYAIFWS ISTGQQGVLS WMDGYYNGDI  60
KTRKTTQPME FKADLLGLER SEQLRELYDS LSAGDSNQQN KRPSASLSPE DLTDTEWYYL  120
VCMSFTFGQA QGLNPSYCTG NYNRLPGRAL ASNQHLWLSN AQYAESKIFS RSLLAKTVVC  180
IPFMNGVLEL GTTELVLEDP SLIQQVTTSF WDLPYPTCSE QSRSASPKGE KEEVNLCSNL  240
HRSNINAIGE EPHLLEVGSP SFPFPLHNYE NENEELHNKL DEVHVNLYEE LNIDSTDDSL  300
RVEVHNSTSQ VHGRQLMDDE FSNGLHGSLN SSDCISQSFL TPQRIKNPTL FTVQEGELNK  360
LTDLEDDASH YARTLVAILR NSKQSAPISC PMNGSHNSSF SIWMRGFNAH KTFSSTPQKL  420
LKKVLIDTAW IPGAQPTKPI EENGPQNKVW KSQGDDAGVS HVLSERRRRE KLNEKFLILR  480
NLVPSISKVD KASILGDTIE YLRELEQRVE ELESCRELLD HESRTRRKYP DIAERTSDNY  540
CNKKIPNGQV SASKRKASDI NETDVEHHWI LSKDGPIDVN VTVIEKEVFL EIRCPWRECL  600
LLEIVEVLSN LHLDPLSMQS STADGVLALT IKAKFVGSVM ASPGMIKQSL QRVASKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-14172106192Transcription factor MYC3
4rqw_B3e-14172106192Transcription factor MYC3
4rs9_A3e-14172106192Transcription factor MYC3
4yz6_A3e-14172106192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464469ERRRRE
2465470RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084606.10.0transcription factor EGL1-like isoform X1
RefseqXP_020084607.10.0transcription factor EGL1-like isoform X1
TrEMBLA0A199VGV10.0A0A199VGV1_ANACO; Transcription factor GLABRA 3 (Fragment)
STRINGXP_008806796.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-129bHLH family protein