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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aco011895.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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| Family | NAC | ||||||||
| Protein Properties | Length: 701aa MW: 79325.4 Da PI: 5.5502 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 182.6 | 9.8e-57 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96
lppGfrFhPtdeel+ +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s +
Aco011895.1 6 LPPGFRFHPTDEELIIYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRKVNS-Q 101
79****************************.99**************95334455777**************************************.9 PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128
+++vg+kktLv+y+grap+g++tdWvmheyrl
Aco011895.1 102 KRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
999***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.31E-64 | 4 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 61.565 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.3E-29 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 701 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI IYYLKRKING RKIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATRAGYWK ATGKDRKVNS QKRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDEKECES ATGLQDAYAL CRVFKKSAPG PKIIEHYGAP YEEHSQWRAN 180 DHSPTLDVSS DGRGEDLESC SFSFPVETGS SDMIQGSSVA GNGKWMNFLP EEALNATGLL 240 CDPFSYSYLP SKKLRSGQTR SYRVYDAAVA HVLCDVQVDV ALECARLQHR LSLPPLEVED 300 FPPVDLMDSK VGLHTAMLRD HNHNEVDILQ EILSVASASQ ELINNSSYTD MWHGNTSHFE 360 DYASLLELDK RNEALQFPQI EIAGSTRLIG KQCEEDDSGR LIEISDLEEE FKEEKKKIEN 420 LRGVKMLNNN LPEIILEEEQ SNPTESTTNY PLDASGTEGE AVHLTNSTEL GDIDDKPIFS 480 QSQPDDFTVG FIGINPLGAS QEEHHCEAYA NAPTFDFYEK VDVKHGLFIS RGGVAETHFH 540 QIEPSKKVSF HMNPMARDNV LVETIEKGRS RVSVFSKFKA FMRDKINGEK ISMKPCKRSL 600 GNETMSGMLQ VVSTVILNSC VYLGDVSEQA ISMEQASLKE NQMKEEKEGA CSNELKQVKN 660 WKKSDQENNI WFPGVRKRGF VSMLLYGKWA FFTAPFALAH * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 8e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 8e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 8e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00212 | DAP | Transfer from AT1G65910 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020083656.1 | 0.0 | NAC domain-containing protein 86-like isoform X1 | ||||
| TrEMBL | A0A199UN23 | 0.0 | A0A199UN23_ANACO; NAC domain-containing protein 86 | ||||
| STRING | XP_008778272.1 | 0.0 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP6624 | 36 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 1e-119 | NAC domain containing protein 28 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Aco011895.1 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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