PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco011421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 879aa MW: 97273 Da PI: 9.0434 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75 | 1.2e-23 | 787 | 867 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li++r +++++++++k+++ lWee+s+ m+++g++r+p qCk+ w +l ++y++ +++e+++ st+pyf++++ Aco011421.1 787 KWKPEEIKRLIKMRGDLDNKFQTTKARMVLWEEISDDMMSHGITRTPAQCKSLWASLVQKYEESRKNENGK-----STWPYFSDMD 867 7*****************************************************************99984.....69*******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 5.3E-67 | 78 | 328 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 9.24E-72 | 79 | 493 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 9.2E-24 | 91 | 288 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 4.1E-10 | 103 | 238 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 5.6E-6 | 436 | 465 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 7.886 | 780 | 844 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 782 | 846 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0094 | 784 | 846 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-19 | 785 | 869 | No hit | No description |
CDD | cd12203 | 9.05E-22 | 786 | 851 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 879 aa Download sequence Send to blast |
MVSLVALPPL CPCGLARRPM VVRPVLRCSA GHPSATKGSR ESKVPRKRSR RMEGVGKSLE 60 DSVQRKLEQF YEGLDGPPLR VLPIGGLGEI GMNCMLVGHY DRYILVDAGV MFPDYDEFGV 120 QKIIPDTTFI KRWSHKIEAV IITHGHEDHI GALPWVIPAL DSNTPIFASS FTMELIKKRL 180 KEFGIFLSSR LKAFKVRRKF CAGPFEVEPI RVTHSIPDCC GLVLRCSDGT IFHTGDWKID 240 ESPVDGKIFD REALEELSKE GVTLMMSDST NVLSPGRSIS ESVVADALLR HISAAKGRVI 300 TTQFASNIHR IGSVKAAADL TGRKLVFVGM SLRTYLDAAF KDGKAPLDPS TLVKVEDIDA 360 YAPKDLLIVT TGSQAEPRAA LNLASYGGSH CLKLSKEDVI LYSAKVIPGN ETRVMKMLNR 420 LSELGPTIVM GKNSGLHTSG HGYRDELEEV LKIVKPQHFL PIHGELLFLK EHELLGRSTG 480 IRHTTVIKNG EMLGVSHLRN RRVLSTGFAS LGKEELQLMY SDGDKAFGTS AELCIDERLR 540 IAADGIIIVS MEIMRPRNVN GSSQSSLKGK IRITTRCLWL DKGKLLDALY KAAHAALSSC 600 PVNCPLAHME RIVSEVLRKM VRKYSSKRPE VIAIAVENTT GVLVEELTTK LSGESHGNFG 660 FSVVNQLSDR HLTKSSSKKF KEDAAEMHDD LNVMEEEPEG DNSEVEESIS DDASRSSRQD 720 LSSPESPMKL VEFWESYKSP SAVEIAKAAN GSVSVDHSKS NKRKVNNSKV PTKLGPQPAG 780 KSAKRNKWKP EEIKRLIKMR GDLDNKFQTT KARMVLWEEI SDDMMSHGIT RTPAQCKSLW 840 ASLVQKYEES RKNENGKSTW PYFSDMDKIV SIDEKATK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 2e-86 | 79 | 637 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 2e-86 | 79 | 637 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 2e-86 | 79 | 637 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 2e-86 | 79 | 637 | 19 | 560 | RIBONUCLEASE J |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020104743.1 | 0.0 | uncharacterized protein LOC109721501 isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A199V9W9 | 0.0 | A0A199V9W9_ANACO; Ribonuclease J | ||||
STRING | XP_008811801.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4996 | 35 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco011421.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|