 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco011192.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
C2H2 |
| Protein Properties |
Length: 399aa MW: 44290.6 Da PI: 9.7812 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco011192.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.6 | 5.5e-07 | 175 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++CpdCg+ F +++L++H++ H
Aco011192.1 175 FSCPDCGEIFVKSDSLEVHQSIrH 198
89******************9888 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MAETRRAREP MKRIKETQKL NHQEPESPSY REALRNLFTC RSRHRAAAAA AAAAEAKNKK 60
NGRRIGCSGS LCNLKDDSRI MQKPERDASP EPVKRRASVS SCNVNERSTK KPLGEANRVV 120
STSSSSHSSA SSTSSIGGSF RGMHLRRLSG CYECHMVIDP INGLLRDSSL RATIFSCPDC 180
GEIFVKSDSL EVHQSIRHAV SELGTEDTSR NIVEIIFQSS WLKKQAPICK IDRILKVHNT 240
QKTKTKFEDY RECIKNKASK LSKKYPRCIA DGNELLRFHC TTIKCSLGLH GSTNLCDSIP 300
QCSVCSIIRD GFKTDKNGRI VTMATSGRAH DNAKISLDDE RRAMLLCRVI AGRVKRNQDS 360
VEEYDSVAGT AGVYSNLDEL FVFNPKAILP CFVVIYRG*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KM667133 | 1e-128 | KM667133.1 Ananas bracteatus clone 52537b microsatellite sequence. |
