PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Trihelix | ||||||||
Protein Properties | Length: 204aa MW: 24605.9 Da PI: 9.8295 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.5 | 2.3e-15 | 3 | 61 | 24 | 86 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +k++kplWee s+++r +gf r+++qCk+kw+nl +r+k +++ +++ +++p+ ++++ Aco011052.1 3 TKRNKPLWEEMSNRLRCKGFFRTAEQCKSKWKNLVTRFKGCEALQQDA----NKQFPFHEEMR 61 5789****************************************9985....56799999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.051 | 1 | 37 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.1E-13 | 3 | 63 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MATKRNKPLW EEMSNRLRCK GFFRTAEQCK SKWKNLVTRF KGCEALQQDA NKQFPFHEEM 60 RRIFSKRMER VLSSDTNKEG NEEEEEEEEK MDERSKRKGG VVKKKKKRKE LEEEVAVALK 120 EFVRRQAERE AWWVEAAEAR EAERRVKEEE WRSAMAALSE ERVAMERRWR EREEERRSRE 180 EVRAERRHAL IMSLLNKLAN EEA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 108 | KKKKKRK |
2 | 103 | 108 | KKKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087248.1 | 1e-136 | trihelix transcription factor GT-3b-like isoform X1 | ||||
Swissprot | O80450 | 2e-31 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A199VZ06 | 2e-84 | A0A199VZ06_ANACO; Trihelix transcription factor GT-3b (Fragment) | ||||
STRING | XP_007140273.1 | 5e-50 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 6e-25 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco011052.1 |
Publications ? help Back to Top | |||
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