PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011052.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 204aa    MW: 24605.9 Da    PI: 9.8295
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011052.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.3e-153612486
     trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                 +k++kplWee s+++r +gf r+++qCk+kw+nl +r+k +++ +++      +++p+ ++++
  Aco011052.1  3 TKRNKPLWEEMSNRLRCKGFFRTAEQCKSKWKNLVTRFKGCEALQQDA----NKQFPFHEEMR 61
                 5789****************************************9985....56799999996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.051137IPR017877Myb-like domain
PfamPF138372.1E-13363No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATKRNKPLW EEMSNRLRCK GFFRTAEQCK SKWKNLVTRF KGCEALQQDA NKQFPFHEEM  60
RRIFSKRMER VLSSDTNKEG NEEEEEEEEK MDERSKRKGG VVKKKKKRKE LEEEVAVALK  120
EFVRRQAERE AWWVEAAEAR EAERRVKEEE WRSAMAALSE ERVAMERRWR EREEERRSRE  180
EVRAERRHAL IMSLLNKLAN EEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108KKKKKRK
2103108KKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087248.11e-136trihelix transcription factor GT-3b-like isoform X1
SwissprotO804502e-31TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A199VZ062e-84A0A199VZ06_ANACO; Trihelix transcription factor GT-3b (Fragment)
STRINGXP_007140273.15e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-25Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]