PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011042.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 422aa    MW: 46371.7 Da    PI: 6.5068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011042.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166991123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C k F r  nL+ H+r H
  Aco011042.1 69 FFCETCRKGFQREQNLRLHLRGH 91
                 67*******************98 PP
2zf-C2H214.10.00014149170223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ Cg+++   s+L+ H++++
  Aco011042.1 149 ECERCGRMYALDSDLRAHLKSC 170
                  7*******************98 PP
3zf-C2H215.26.3e-05177198223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +Cp Cg+ F+rk+++  H  t+
  Aco011042.1 177 RCPTCGEDFTRKELYDEHRETC 198
                  8*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-46891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.076991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6376996IPR007087Zinc finger, C2H2
PfamPF121713.8E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM0035558113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-8143194No hitNo description
SMARTSM00355150148168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016148175IPR007087Zinc finger, C2H2
SMARTSM0035574176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLQHPIANPT ELVANKNKNN NNNNNNNRNS RRRHKNEGRD RPNAPEIQAS PGAEVVALTA  60
EELVATNRFF CETCRKGFQR EQNLRLHLRG HNIPSELQRR AEGVAPTRGR CVYVCPVEDC  120
VYHDPARALG DITGIKKHFS RKHGEKRWEC ERCGRMYALD SDLRAHLKSC RGTQILRCPT  180
CGEDFTRKEL YDEHRETCGV VAPAVADPGD SPPIDVPNYL LGFTQLLSSS SSFSCPRPNP  240
NPLDLGIWPS SVGGGSSSAP TERTPNPSPL SGPNLSLSSS LLGLSEEEMR RKKKNEYLFE  300
NPNLPPPLPL LSSSSFSPSP FVDYGLMNSM QGPSGEPHNN AGSVMETECE APQPDVEVYR  360
PTMVDPTATP SEMQVGTASG GGPSLRLRGD SERPGEREID GFTELMLSSF NGDGAFRSDF  420
W*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.12e-60C2H2 family protein